ORCAE-AOCC : a centralized portal for the annotation of African orphan crop genomes
- Author
- Anna EJ Yssel, Shu-Min Kao, Yves Van de Peer (UGent) and Lieven Sterck (UGent)
- Organization
- Abstract
- ORCAE (Online Resource for Community Annotation of Eukaryotes) is a public genome annotation curation resource. ORCAE-AOCC is a branch that is dedicated to the genomes published as part of the African Orphan Crops Consortium (AOCC). The motivation behind the development of the ORCAE platform was to create a knowledge-based website where the research-community can make contributions to improve genome annotations. All changes to any given gene-model or gene description are stored, and the entire annotation history can be retrieved. Genomes can either be set to “public” or “restricted” mode; anonymous users can browse public genomes but cannot make any changes. Aside from providing a user- friendly interface to view genome annotations, the platform also includes tools and information (such as gene expression evidence) that enables authorized users to edit and validate genome annotations. The ORCAE-AOCC platform will enable various stakeholders from around the world to coordinate their efforts to annotate and study underutilized crops.
- Keywords
- genome portal, genome resource, genome annotation, manual curation, African orphan crops, HYPOTHETICAL GENES, RESOURCE, CHROMOSOME-2, SECURITY, CDNAS
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-8637415
- MLA
- Yssel, Anna EJ, et al. “ORCAE-AOCC : A Centralized Portal for the Annotation of African Orphan Crop Genomes.” GENES, vol. 10, no. 12, 2019, doi:10.3390/genes10120950.
- APA
- Yssel, A. E., Kao, S.-M., Van de Peer, Y., & Sterck, L. (2019). ORCAE-AOCC : a centralized portal for the annotation of African orphan crop genomes. GENES, 10(12). https://doi.org/10.3390/genes10120950
- Chicago author-date
- Yssel, Anna EJ, Shu-Min Kao, Yves Van de Peer, and Lieven Sterck. 2019. “ORCAE-AOCC : A Centralized Portal for the Annotation of African Orphan Crop Genomes.” GENES 10 (12). https://doi.org/10.3390/genes10120950.
- Chicago author-date (all authors)
- Yssel, Anna EJ, Shu-Min Kao, Yves Van de Peer, and Lieven Sterck. 2019. “ORCAE-AOCC : A Centralized Portal for the Annotation of African Orphan Crop Genomes.” GENES 10 (12). doi:10.3390/genes10120950.
- Vancouver
- 1.Yssel AE, Kao S-M, Van de Peer Y, Sterck L. ORCAE-AOCC : a centralized portal for the annotation of African orphan crop genomes. GENES. 2019;10(12).
- IEEE
- [1]A. E. Yssel, S.-M. Kao, Y. Van de Peer, and L. Sterck, “ORCAE-AOCC : a centralized portal for the annotation of African orphan crop genomes,” GENES, vol. 10, no. 12, 2019.
@article{8637415,
abstract = {{ORCAE (Online Resource for Community Annotation of Eukaryotes) is a public genome annotation curation resource. ORCAE-AOCC is a branch that is dedicated to the genomes published as part of the African Orphan Crops Consortium (AOCC). The motivation behind the development of the ORCAE platform was to create a knowledge-based website where the research-community can make contributions to improve genome annotations. All changes to any given gene-model or gene description are stored, and the entire annotation history can be retrieved. Genomes can either be set to “public” or “restricted” mode; anonymous users can browse public genomes but cannot make any changes. Aside from providing a user- friendly interface to view genome annotations, the platform also includes tools and information (such as gene expression evidence) that enables authorized users to edit and validate genome annotations. The ORCAE-AOCC platform will enable various stakeholders from around the world to coordinate their efforts to annotate and study underutilized crops.}},
articleno = {{950}},
author = {{Yssel, Anna EJ and Kao, Shu-Min and Van de Peer, Yves and Sterck, Lieven}},
issn = {{2073-4425}},
journal = {{GENES}},
keywords = {{genome portal,genome resource,genome annotation,manual curation,African orphan crops,HYPOTHETICAL GENES,RESOURCE,CHROMOSOME-2,SECURITY,CDNAS}},
language = {{eng}},
number = {{12}},
pages = {{8}},
title = {{ORCAE-AOCC : a centralized portal for the annotation of African orphan crop genomes}},
url = {{http://dx.doi.org/10.3390/genes10120950}},
volume = {{10}},
year = {{2019}},
}
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