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Gene space completeness in complex plant genomes

Michiel Van Bel (UGent) , François Bucchini (UGent) and Klaas Vandepoele (UGent)
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Abstract
Genome annotations offer ample opportunities to study gene functions, biochemical and regulatory pathways, or quantitative trait loci in plants. Determining the quality and completeness of a genome annotation, and maintaining the balance between them, are major challenges, even for genomes of well-studied model organisms. In this review, we present a historical overview of the complexity in different plant genomes and discuss the hurdles and possible solutions in obtaining a complete and high-quality genome annotation. We illustrate there is no clear-cut answer to solve these challenges for different gene types, but provide tips on guiding the iterative process of generating a superior genome annotation, which is a moving target as our knowledge about plant genomics increases and additional data sources become available.
Keywords
Plant Science

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Citation

Please use this url to cite or link to this publication:

Chicago
Van Bel, Michiel, François Bucchini, and Klaas Vandepoele. 2019. “Gene Space Completeness in Complex Plant Genomes.” Ed. Steven Kelly. Current Opinion in Plant Biology 48: 9–17.
APA
Van Bel, M., Bucchini, F., & Vandepoele, K. (2019). Gene space completeness in complex plant genomes. (S. Kelly, Ed.)CURRENT OPINION IN PLANT BIOLOGY, 48, 9–17.
Vancouver
1.
Van Bel M, Bucchini F, Vandepoele K. Gene space completeness in complex plant genomes. Kelly S, editor. CURRENT OPINION IN PLANT BIOLOGY. 2019;48:9–17.
MLA
Van Bel, Michiel, François Bucchini, and Klaas Vandepoele. “Gene Space Completeness in Complex Plant Genomes.” Ed. Steven Kelly. CURRENT OPINION IN PLANT BIOLOGY 48 (2019): 9–17. Print.
@article{8606436,
  abstract     = {Genome annotations offer ample opportunities to study gene functions, biochemical and regulatory pathways, or quantitative trait loci in plants. Determining the quality and completeness of a genome annotation, and maintaining the balance between them, are major challenges, even for genomes of well-studied model organisms. In this review, we present a historical overview of the complexity in different plant genomes and discuss the hurdles and possible solutions in obtaining a complete and high-quality genome annotation. We illustrate there is no clear-cut answer to solve these challenges for different gene types, but provide tips on guiding the iterative process of generating a superior genome annotation, which is a moving target as our knowledge about plant genomics increases and additional data sources become available.},
  author       = {Van Bel, Michiel and Bucchini, Fran\c{c}ois and Vandepoele, Klaas},
  editor       = {Kelly, Steven},
  issn         = {1369-5266},
  journal      = {CURRENT OPINION IN PLANT BIOLOGY},
  language     = {eng},
  pages        = {9--17},
  title        = {Gene space completeness in complex plant genomes},
  url          = {http://dx.doi.org/10.1016/j.pbi.2019.01.001},
  volume       = {48},
  year         = {2019},
}

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