Gene space completeness in complex plant genomes
- Author
- Michiel Van Bel (UGent) , François Bucchini (UGent) and Klaas Vandepoele (UGent)
- Organization
- Abstract
- Genome annotations offer ample opportunities to study gene functions, biochemical and regulatory pathways, or quantitative trait loci in plants. Determining the quality and completeness of a genome annotation, and maintaining the balance between them, are major challenges, even for genomes of well-studied model organisms. In this review, we present a historical overview of the complexity in different plant genomes and discuss the hurdles and possible solutions in obtaining a complete and high-quality genome annotation. We illustrate there is no clear-cut answer to solve these challenges for different gene types, but provide tips on guiding the iterative process of generating a superior genome annotation, which is a moving target as our knowledge about plant genomics increases and additional data sources become available.
- Keywords
- TRANSCRIPTOME, PREDICTION, DIVERSITY, SEQUENCE, RICE
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-8606436
- MLA
- Van Bel, Michiel, et al. “Gene Space Completeness in Complex Plant Genomes.” CURRENT OPINION IN PLANT BIOLOGY, edited by Steven Kelly, vol. 48, 2019, pp. 9–17, doi:10.1016/j.pbi.2019.01.001.
- APA
- Van Bel, M., Bucchini, F., & Vandepoele, K. (2019). Gene space completeness in complex plant genomes. CURRENT OPINION IN PLANT BIOLOGY, 48, 9–17. https://doi.org/10.1016/j.pbi.2019.01.001
- Chicago author-date
- Van Bel, Michiel, François Bucchini, and Klaas Vandepoele. 2019. “Gene Space Completeness in Complex Plant Genomes.” Edited by Steven Kelly. CURRENT OPINION IN PLANT BIOLOGY 48: 9–17. https://doi.org/10.1016/j.pbi.2019.01.001.
- Chicago author-date (all authors)
- Van Bel, Michiel, François Bucchini, and Klaas Vandepoele. 2019. “Gene Space Completeness in Complex Plant Genomes.” Ed by. Steven Kelly. CURRENT OPINION IN PLANT BIOLOGY 48: 9–17. doi:10.1016/j.pbi.2019.01.001.
- Vancouver
- 1.Van Bel M, Bucchini F, Vandepoele K. Gene space completeness in complex plant genomes. Kelly S, editor. CURRENT OPINION IN PLANT BIOLOGY. 2019;48:9–17.
- IEEE
- [1]M. Van Bel, F. Bucchini, and K. Vandepoele, “Gene space completeness in complex plant genomes,” CURRENT OPINION IN PLANT BIOLOGY, vol. 48, pp. 9–17, 2019.
@article{8606436,
abstract = {{Genome annotations offer ample opportunities to study gene functions, biochemical and regulatory pathways, or quantitative trait loci in plants. Determining the quality and completeness of a genome annotation, and maintaining the balance between them, are major challenges, even for genomes of well-studied model organisms. In this review, we present a historical overview of the complexity in different plant genomes and discuss the hurdles and possible solutions in obtaining a complete and high-quality genome annotation. We illustrate there is no clear-cut answer to solve these challenges for different gene types, but provide tips on guiding the iterative process of generating a superior genome annotation, which is a moving target as our knowledge about plant genomics increases and additional data sources become available.}},
author = {{Van Bel, Michiel and Bucchini, François and Vandepoele, Klaas}},
editor = {{Kelly, Steven}},
issn = {{1369-5266}},
journal = {{CURRENT OPINION IN PLANT BIOLOGY}},
keywords = {{TRANSCRIPTOME,PREDICTION,DIVERSITY,SEQUENCE,RICE}},
language = {{eng}},
pages = {{9--17}},
title = {{Gene space completeness in complex plant genomes}},
url = {{http://doi.org/10.1016/j.pbi.2019.01.001}},
volume = {{48}},
year = {{2019}},
}
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