Advanced search
2 files | 3.15 MB Add to list

Gene space completeness in complex plant genomes

Michiel Van Bel (UGent) , François Bucchini (UGent) and Klaas Vandepoele (UGent)
Author
Organization
Abstract
Genome annotations offer ample opportunities to study gene functions, biochemical and regulatory pathways, or quantitative trait loci in plants. Determining the quality and completeness of a genome annotation, and maintaining the balance between them, are major challenges, even for genomes of well-studied model organisms. In this review, we present a historical overview of the complexity in different plant genomes and discuss the hurdles and possible solutions in obtaining a complete and high-quality genome annotation. We illustrate there is no clear-cut answer to solve these challenges for different gene types, but provide tips on guiding the iterative process of generating a superior genome annotation, which is a moving target as our knowledge about plant genomics increases and additional data sources become available.
Keywords
TRANSCRIPTOME, PREDICTION, DIVERSITY, SEQUENCE, RICE

Downloads

  • (...).pdf
    • full text
    • |
    • UGent only
    • |
    • PDF
    • |
    • 788.70 KB
  • COPB VanBel et al gene space completeness accepted.pdf
    • full text (Accepted manuscript)
    • |
    • open access
    • |
    • PDF
    • |
    • 2.36 MB

Citation

Please use this url to cite or link to this publication:

MLA
Van Bel, Michiel, et al. “Gene Space Completeness in Complex Plant Genomes.” CURRENT OPINION IN PLANT BIOLOGY, edited by Steven Kelly, vol. 48, 2019, pp. 9–17.
APA
Van Bel, M., Bucchini, F., & Vandepoele, K. (2019). Gene space completeness in complex plant genomes. CURRENT OPINION IN PLANT BIOLOGY, 48, 9–17.
Chicago author-date
Van Bel, Michiel, François Bucchini, and Klaas Vandepoele. 2019. “Gene Space Completeness in Complex Plant Genomes.” Edited by Steven Kelly. CURRENT OPINION IN PLANT BIOLOGY 48: 9–17.
Chicago author-date (all authors)
Van Bel, Michiel, François Bucchini, and Klaas Vandepoele. 2019. “Gene Space Completeness in Complex Plant Genomes.” Ed by. Steven Kelly. CURRENT OPINION IN PLANT BIOLOGY 48: 9–17.
Vancouver
1.
Van Bel M, Bucchini F, Vandepoele K. Gene space completeness in complex plant genomes. Kelly S, editor. CURRENT OPINION IN PLANT BIOLOGY. 2019;48:9–17.
IEEE
[1]
M. Van Bel, F. Bucchini, and K. Vandepoele, “Gene space completeness in complex plant genomes,” CURRENT OPINION IN PLANT BIOLOGY, vol. 48, pp. 9–17, 2019.
@article{8606436,
  abstract     = {Genome annotations offer ample opportunities to study gene functions, biochemical and regulatory pathways, or quantitative trait loci in plants. Determining the quality and completeness of a genome annotation, and maintaining the balance between them, are major challenges, even for genomes of well-studied model organisms. In this review, we present a historical overview of the complexity in different plant genomes and discuss the hurdles and possible solutions in obtaining a complete and high-quality genome annotation. We illustrate there is no clear-cut answer to solve these challenges for different gene types, but provide tips on guiding the iterative process of generating a superior genome annotation, which is a moving target as our knowledge about plant genomics increases and additional data sources become available.},
  author       = {Van Bel, Michiel and Bucchini, François and Vandepoele, Klaas},
  editor       = {Kelly, Steven},
  issn         = {1369-5266},
  journal      = {CURRENT OPINION IN PLANT BIOLOGY},
  keywords     = {TRANSCRIPTOME,PREDICTION,DIVERSITY,SEQUENCE,RICE},
  language     = {eng},
  pages        = {9--17},
  title        = {Gene space completeness in complex plant genomes},
  url          = {http://dx.doi.org/10.1016/j.pbi.2019.01.001},
  volume       = {48},
  year         = {2019},
}

Altmetric
View in Altmetric
Web of Science
Times cited: