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Exploring the protein-protein interaction landscape in plants

(2019) PLANT CELL AND ENVIRONMENT. 42(2). p.387-409
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Abstract
Protein-protein interactions (PPIs) represent an essential aspect of plant systems biology. Identification of key protein players and their interaction networks provide crucial insights into the regulation of plant developmental processes and into interactions of plants with their environment. Despite the great advance in the methods for the discovery and validation of PPIs, still several challenges remain. First, the PPI networks are usually highly dynamic, and the in vivo interactions are often transient and difficult to detect. Therefore, the properties of the PPIs under study need to be considered to select the most suitable technique, because each has its own advantages and limitations. Second, besides knowledge on the interacting partners of a protein of interest, characteristics of the interaction, such as the spatial or temporal dynamics, are highly important. Hence, multiple approaches have to be combined to obtain a comprehensive view on the PPI network present in a cell. Here, we present the progress in commonly used methods to detect and validate PPIs in plants with a special emphasis on the PPI features assessed in each approach and how they were or can be used for the study of plant interactions with their environment.
Keywords
protein-protein interaction techniques, plant interactome, signal transduction pathway, plant-environment interactions, co-complex purification, binary methods, TANDEM AFFINITY PURIFICATION, RESONANCE ENERGY-TRANSFER, SURFACE-PLASMON RESONANCE, FLUORESCENCE CORRELATION SPECTROSCOPY, RECEPTOR-LIKE KINASE, MOLECULE PULL-DOWN, TRANSCRIPTION FACTORS, INTERACTION NETWORK, SIGNALING PATHWAY, STRESS TOLERANCE

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MLA
Struk, Sylwia Magdalena, et al. “Exploring the Protein-Protein Interaction Landscape in Plants.” PLANT CELL AND ENVIRONMENT, vol. 42, no. 2, 2019, pp. 387–409.
APA
Struk, S. M., Jacobs, A., Sánchez Martín-Fontecha, E., Gevaert, K., Cubas, P., & Goormachtig, S. (2019). Exploring the protein-protein interaction landscape in plants. PLANT CELL AND ENVIRONMENT, 42(2), 387–409.
Chicago author-date
Struk, Sylwia Magdalena, Anse Jacobs, Elena Sánchez Martín-Fontecha, Kris Gevaert, Pilar Cubas, and Sofie Goormachtig. 2019. “Exploring the Protein-Protein Interaction Landscape in Plants.” PLANT CELL AND ENVIRONMENT 42 (2): 387–409.
Chicago author-date (all authors)
Struk, Sylwia Magdalena, Anse Jacobs, Elena Sánchez Martín-Fontecha, Kris Gevaert, Pilar Cubas, and Sofie Goormachtig. 2019. “Exploring the Protein-Protein Interaction Landscape in Plants.” PLANT CELL AND ENVIRONMENT 42 (2): 387–409.
Vancouver
1.
Struk SM, Jacobs A, Sánchez Martín-Fontecha E, Gevaert K, Cubas P, Goormachtig S. Exploring the protein-protein interaction landscape in plants. PLANT CELL AND ENVIRONMENT. 2019;42(2):387–409.
IEEE
[1]
S. M. Struk, A. Jacobs, E. Sánchez Martín-Fontecha, K. Gevaert, P. Cubas, and S. Goormachtig, “Exploring the protein-protein interaction landscape in plants,” PLANT CELL AND ENVIRONMENT, vol. 42, no. 2, pp. 387–409, 2019.
@article{8581655,
  abstract     = {Protein-protein interactions (PPIs) represent an essential aspect of plant systems biology. Identification of key protein players and their interaction networks provide crucial insights into the regulation of plant developmental processes and into interactions of plants with their environment. Despite the great advance in the methods for the discovery and validation of PPIs, still several challenges remain. First, the PPI networks are usually highly dynamic, and the in vivo interactions are often transient and difficult to detect. Therefore, the properties of the PPIs under study need to be considered to select the most suitable technique, because each has its own advantages and limitations. Second, besides knowledge on the interacting partners of a protein of interest, characteristics of the interaction, such as the spatial or temporal dynamics, are highly important. Hence, multiple approaches have to be combined to obtain a comprehensive view on the PPI network present in a cell. Here, we present the progress in commonly used methods to detect and validate PPIs in plants with a special emphasis on the PPI features assessed in each approach and how they were or can be used for the study of plant interactions with their environment.},
  author       = {Struk, Sylwia Magdalena and Jacobs, Anse and Sánchez Martín-Fontecha, Elena and Gevaert, Kris and Cubas, Pilar and Goormachtig, Sofie},
  issn         = {0140-7791},
  journal      = {PLANT CELL AND ENVIRONMENT},
  keywords     = {protein-protein interaction techniques,plant interactome,signal transduction pathway,plant-environment interactions,co-complex purification,binary methods,TANDEM AFFINITY PURIFICATION,RESONANCE ENERGY-TRANSFER,SURFACE-PLASMON RESONANCE,FLUORESCENCE CORRELATION SPECTROSCOPY,RECEPTOR-LIKE KINASE,MOLECULE PULL-DOWN,TRANSCRIPTION FACTORS,INTERACTION NETWORK,SIGNALING PATHWAY,STRESS TOLERANCE},
  language     = {eng},
  number       = {2},
  pages        = {387--409},
  title        = {Exploring the protein-protein interaction landscape in plants},
  url          = {http://dx.doi.org/10.1111/pce.13433},
  volume       = {42},
  year         = {2019},
}

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