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RNAcentral : a hub of information for non-coding RNA sequences

(2019) NUCLEIC ACIDS RESEARCH. 47(D1). p.D221-D229
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Organization
Abstract
RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences, collating information on ncRNA sequences of all types from a broad range of organisms. We have recently added a new genome mapping pipeline that identifies genomic locations for ncRNA sequences in 296 species. We have also added several new types of functional annotations, such as tRNA secondary structures, Gene Ontology annotations, and miRNA-target interactions. A new quality control mechanism based on Rfam family assignments identifies potential contamination, incomplete sequences, and more. The RNAcentral database has become a vital component of many workflows in the RNA community, serving as both the primary source of sequence data for academic and commercial groups, as well as a source of stable accessions for the annotation of genomic and functional features. These examples are facilitated by an improved RNAcentral web interface, which features an updated genome browser, a new sequence feature viewer, and improved text search functionality. RNAcentral is freely available at https://rnacentral.org.
Keywords
GENE ONTOLOGY, DATABASE, ANNOTATION, MOUSE, TOOL

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Citation

Please use this url to cite or link to this publication:

MLA
Sweeney, Blake A., et al. “RNAcentral : A Hub of Information for Non-Coding RNA Sequences.” NUCLEIC ACIDS RESEARCH, vol. 47, no. D1, 2019, pp. D221–29.
APA
Sweeney, B. A., Petrov, A. I., Burkov, B., Finn, R. D., Bateman, A., Szymanski, M., … Williams, K. P. (2019). RNAcentral : a hub of information for non-coding RNA sequences. NUCLEIC ACIDS RESEARCH, 47(D1), D221–D229.
Chicago author-date
Sweeney, Blake A, Anton I Petrov, Boris Burkov, Robert D Finn, Alex Bateman, Maciej Szymanski, Wojciech M Karlowski, et al. 2019. “RNAcentral : A Hub of Information for Non-Coding RNA Sequences.” NUCLEIC ACIDS RESEARCH 47 (D1): D221–29.
Chicago author-date (all authors)
Sweeney, Blake A, Anton I Petrov, Boris Burkov, Robert D Finn, Alex Bateman, Maciej Szymanski, Wojciech M Karlowski, Jan Gorodkin, Stefan E Seemann, Jamie J Cannone, Robin R Gutell, Petra Fey, Siddhartha Basu, Simon Kay, Guy Cochrane, Kostantinos Billis, David Emmert, Steven J Marygold, Rachael P Huntley, Ruth C Lovering, Adam Frankish, Patricia P Chan, Todd M Lowe, Elspeth Bruford, Ruth Seal, Jo Vandesompele, Pieter-Jan Volders, Maria Paraskevopoulou, Lina Ma, Zhang Zhang, Sam Griffiths-Jones, Janusz M Bujnicki, Pietro Boccaletto, Judith A Blake, Carol J Bult, Runsheng Chen, Yi Zhao, Valerie Wood, Kim Rutherford, Elena Rivas, James Cole, Stanley J F Laulederkind, Mary Shimoyama, Marc E Gillespie, Marija Orlic-Milacic, Ioanna Kalvari, Eric Nawrocki, Stacia R Engel, J Michael Cherry, SILVA Team, Tanya Z Berardini, Artemis Hatzigeorgiou, Dimitra Karagkouni, Kevin Howe, Paul Davis, Marcel Dinger, Shunmin He, Maki Yoshihama, Naoya Kenmochi, Peter F Stadler, and Kelly P Williams. 2019. “RNAcentral : A Hub of Information for Non-Coding RNA Sequences.” NUCLEIC ACIDS RESEARCH 47 (D1): D221–D229.
Vancouver
1.
Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, et al. RNAcentral : a hub of information for non-coding RNA sequences. NUCLEIC ACIDS RESEARCH. 2019;47(D1):D221–9.
IEEE
[1]
B. A. Sweeney et al., “RNAcentral : a hub of information for non-coding RNA sequences,” NUCLEIC ACIDS RESEARCH, vol. 47, no. D1, pp. D221–D229, 2019.
@article{8580217,
  abstract     = {RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences, collating information on ncRNA sequences of all types from a broad range of organisms. We have recently added a new genome mapping pipeline that identifies genomic locations for ncRNA sequences in 296 species. We have also added several new types of functional annotations, such as tRNA secondary structures, Gene Ontology annotations, and miRNA-target interactions. A new quality control mechanism based on Rfam family assignments identifies potential contamination, incomplete sequences, and more. The RNAcentral database has become a vital component of many workflows in the RNA community, serving as both the primary source of sequence data for academic and commercial groups, as well as a source of stable accessions for the annotation of genomic and functional features. These examples are facilitated by an improved RNAcentral web interface, which features an updated genome browser, a new sequence feature viewer, and improved text search functionality. RNAcentral is freely available at https://rnacentral.org.},
  author       = {Sweeney, Blake A and Petrov, Anton I and Burkov, Boris and Finn, Robert D and Bateman, Alex and Szymanski, Maciej and Karlowski, Wojciech M and Gorodkin, Jan and Seemann, Stefan E and Cannone, Jamie J and Gutell, Robin R and Fey, Petra and Basu, Siddhartha and Kay, Simon and Cochrane, Guy and Billis, Kostantinos and Emmert, David and Marygold, Steven J and Huntley, Rachael P and Lovering, Ruth C and Frankish, Adam and Chan, Patricia P and Lowe, Todd M and Bruford, Elspeth and Seal, Ruth and Vandesompele, Jo and Volders, Pieter-Jan and Paraskevopoulou, Maria and Ma, Lina and Zhang, Zhang and Griffiths-Jones, Sam and Bujnicki, Janusz M and Boccaletto, Pietro and Blake, Judith A and Bult, Carol J and Chen, Runsheng and Zhao, Yi and Wood, Valerie and Rutherford, Kim and Rivas, Elena and Cole, James and Laulederkind, Stanley J F and Shimoyama, Mary and Gillespie, Marc E and Orlic-Milacic, Marija and Kalvari, Ioanna and Nawrocki, Eric and Engel, Stacia R and Cherry, J Michael and Team, SILVA and Berardini, Tanya Z and Hatzigeorgiou, Artemis and Karagkouni, Dimitra and Howe, Kevin and Davis, Paul and Dinger, Marcel and He, Shunmin and Yoshihama, Maki and Kenmochi, Naoya and Stadler, Peter F and Williams, Kelly P},
  issn         = {0305-1048},
  journal      = {NUCLEIC ACIDS RESEARCH},
  keywords     = {GENE ONTOLOGY,DATABASE,ANNOTATION,MOUSE,TOOL},
  language     = {eng},
  number       = {D1},
  pages        = {D221--D229},
  title        = {RNAcentral : a hub of information for non-coding RNA sequences},
  url          = {http://dx.doi.org/10.1093/nar/gky1034},
  volume       = {47},
  year         = {2019},
}

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