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The Chara genome : secondary complexity and implications for plant terrestrialization

(2018) CELL. 174(2). p.448-464
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Abstract
Land plants evolved from charophytic algae, among which Charophyceae possess the most complex body plans. We present the genome of Chara braunii; comparison of the genome to those of land plants identified evolutionary novelties for plant terrestrialization and land plant heritage genes. C. braunii employs unique xylan synthases for cell wall biosynthesis, a phragmoplast (cell separation) mechanism similar to that of land plants, and many phytohormones. C. braunii plastids are controlled via landplant- like retrograde signaling, and transcriptional regulation is more elaborate than in other algae. The morphological complexity of this organism may result from expanded gene families, with three cases of particular note: genes effecting tolerance to reactive oxygen species (ROS), LysM receptor-like kinases, and transcription factors (TFs). Transcriptomic analysis of sexual reproductive structures reveals intricate control by TFs, activity of the ROS gene network, and the ancestral use of plant-like storage and stress protection proteins in the zygote.
Keywords
MAXIMUM-LIKELIHOOD PHYLOGENIES, MULTIPLE SEQUENCE ALIGNMENT, RIBOSOMAL-RNA GENES, TRANSCRIPTION FACTORS, CHLAMYDOMONAS-REINHARDTII, PHYSCOMITRELLA-PATENS, STREPTOPHYTE ALGAE, DENSITY-ESTIMATION, EVOLUTION, ARABIDOPSIS

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Citation

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MLA
Nishiyama, Tomoaki, Hidetoshi Sakayama, Jan de Vries, et al. “The Chara Genome : Secondary Complexity and Implications for Plant Terrestrialization.” CELL 174.2 (2018): 448–464. Print.
APA
Nishiyama, T., Sakayama, H., de Vries, J., Buschmann, H., Saint-Marcoux, D., Ullrich, K. K., Haas, F. B., et al. (2018). The Chara genome : secondary complexity and implications for plant terrestrialization. CELL, 174(2), 448–464.
Chicago author-date
Nishiyama, Tomoaki, Hidetoshi Sakayama, Jan de Vries, Henrik Buschmann, Denis Saint-Marcoux, Kristian K Ullrich, Fabian B Haas, et al. 2018. “The Chara Genome : Secondary Complexity and Implications for Plant Terrestrialization.” Cell 174 (2): 448–464.
Chicago author-date (all authors)
Nishiyama, Tomoaki, Hidetoshi Sakayama, Jan de Vries, Henrik Buschmann, Denis Saint-Marcoux, Kristian K Ullrich, Fabian B Haas, Lisa Vanderstraeten, Dirk Becker, Daniel Lang, Stanislav Vosolsobe, Stephane Rombauts, Per KI Wilhelmsson, Philipp Janitza, Ramona Kern, Alexander Heyl, Florian Ruempler, Luz Irina A Calderon Villalobos, John M Clay, Roman Skokan, Atsushi Toyoda, Yutaka Suzuki, Hiroshi Kagoshima, Elio Schijlen, Navindra Tajeshwar, Bruno Catarino, Alexander J Hetherington, Assia Saltykova, Clemence Bonnot, Holger Breuninger, Aikaterini Symeonidi, Guru V Radhakrishnan, Filip Van Nieuwerburgh, Dieter Deforce, Caren Chang, Kenneth G Karol, Rainer Hedrich, Peter Ulvskov, Gernot Gloeckner, Charles F Delwiche, Jan Petrasek, Yves Van de Peer, Jiri Friml, Mary Beilby, Liam Dolan, Yuji Kohara, Sumio Sugano, Asao Fujiyama, Pierre-Marc Delaux, Marcel Quint, Gunter Theissen, Martin Hagemann, Jesper Harholt, Christophe Dunand, Sabine Zachgo, Jane Langdale, Florian Maumus, Dominique Van Der Straeten, Sven B Gould, and Stefan A Rensing. 2018. “The Chara Genome : Secondary Complexity and Implications for Plant Terrestrialization.” Cell 174 (2): 448–464.
Vancouver
1.
Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, et al. The Chara genome : secondary complexity and implications for plant terrestrialization. CELL. 2018;174(2):448–64.
IEEE
[1]
T. Nishiyama et al., “The Chara genome : secondary complexity and implications for plant terrestrialization,” CELL, vol. 174, no. 2, pp. 448–464, 2018.
@article{8569924,
  abstract     = {Land plants evolved from charophytic algae, among which Charophyceae possess the most complex body plans. We present the genome of Chara braunii; comparison of the genome to those of land plants identified evolutionary novelties for plant terrestrialization and land plant heritage genes. C. braunii employs unique xylan synthases for cell wall biosynthesis, a phragmoplast (cell separation) mechanism similar to that of land plants, and many phytohormones. C. braunii plastids are controlled via landplant- like retrograde signaling, and transcriptional regulation is more elaborate than in other algae. The morphological complexity of this organism may result from expanded gene families, with three cases of particular note: genes effecting tolerance to reactive oxygen species (ROS), LysM receptor-like kinases, and transcription factors (TFs). Transcriptomic analysis of sexual reproductive structures reveals intricate control by TFs, activity of the ROS gene network, and the ancestral use of plant-like storage and stress protection proteins in the zygote.},
  author       = {Nishiyama, Tomoaki and Sakayama, Hidetoshi and de Vries, Jan and Buschmann, Henrik and Saint-Marcoux, Denis and Ullrich, Kristian K and Haas, Fabian B and Vanderstraeten, Lisa and Becker, Dirk and Lang, Daniel and Vosolsobe, Stanislav and Rombauts, Stephane and Wilhelmsson, Per KI and Janitza, Philipp and Kern, Ramona and Heyl, Alexander and Ruempler, Florian and Calderon Villalobos, Luz Irina A and Clay, John M and Skokan, Roman and Toyoda, Atsushi and Suzuki, Yutaka and Kagoshima, Hiroshi and Schijlen, Elio and Tajeshwar, Navindra and Catarino, Bruno and Hetherington, Alexander J and Saltykova, Assia and Bonnot, Clemence and Breuninger, Holger and Symeonidi, Aikaterini and Radhakrishnan, Guru V and Van Nieuwerburgh, Filip and Deforce, Dieter and Chang, Caren and Karol, Kenneth G and Hedrich, Rainer and Ulvskov, Peter and Gloeckner, Gernot and Delwiche, Charles F and Petrasek, Jan and Van de Peer, Yves and Friml, Jiri and Beilby, Mary and Dolan, Liam and Kohara, Yuji and Sugano, Sumio and Fujiyama, Asao and Delaux, Pierre-Marc and Quint, Marcel and Theissen, Gunter and Hagemann, Martin and Harholt, Jesper and Dunand, Christophe and Zachgo, Sabine and Langdale, Jane and Maumus, Florian and Van Der Straeten, Dominique and Gould, Sven B and Rensing, Stefan A},
  issn         = {0092-8674},
  journal      = {CELL},
  keywords     = {MAXIMUM-LIKELIHOOD PHYLOGENIES,MULTIPLE SEQUENCE ALIGNMENT,RIBOSOMAL-RNA GENES,TRANSCRIPTION FACTORS,CHLAMYDOMONAS-REINHARDTII,PHYSCOMITRELLA-PATENS,STREPTOPHYTE ALGAE,DENSITY-ESTIMATION,EVOLUTION,ARABIDOPSIS},
  language     = {eng},
  number       = {2},
  pages        = {448--464},
  title        = {The Chara genome : secondary complexity and implications for plant terrestrialization},
  url          = {http://dx.doi.org/10.1016/j.cell.2018.06.033},
  volume       = {174},
  year         = {2018},
}

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