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Recent trends in plant protein complex analysis in a developmental context

Michiel Bontinck (UGent) , Jelle Van Leene (UGent) , Astrid Gadeyne (UGent) , Bert De Rybel (UGent) , Dominique Eeckhout (UGent) , Hilde Nelissen (UGent) and Geert De Jaeger (UGent)
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Abstract
Because virtually all proteins interact with other proteins, studying protein-protein interactions (PPIs) is fundamental in understanding protein function. This is especially true when studying specific developmental processes, in which proteins often make developmental stage-or tissue specific interactions. However, studying these specific PPIs in planta can be challenging. One of the most widely adopted methods to study PPIs in planta is affinity purification coupled to mass spectrometry (AP/MS). Recent developments in the field of mass spectrometry have boosted applications of AP/MS in a developmental context. This review covers two main advancements in the field of affinity purification to study plant developmental processes: increasing the developmental resolution of the harvested tissues and moving from affinity purification to affinity enrichment. Furthermore, we discuss some new affinity purification approaches that have recently emerged and could have a profound impact on the future of protein interactome analysis in plants.
Keywords
TANDEM AFFINITY PURIFICATION, CELL-CYCLE INTERACTOME, MASS-SPECTROMETRY, ARABIDOPSIS-THALIANA, FLOWER DEVELOPMENT, TRANSCRIPTION FACTORS, GENE-EXPRESSION, SUSPENSION-CULTURES, LEAF DEVELOPMENT, ROOT DEVELOPMENT, plant development, affinity enrichment, tandem affinity purification, Arabidopsis thaliana, interactomics, proximity-dependent labeling

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  • Bontinck et al. (2018) Frontiers in Plant Science 9,640.pdf
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Chicago
Bontinck, Michiel, Jelle Van Leene, Astrid Gadeyne, Bert De Rybel, Dominique Eeckhout, Hilde Nelissen, and Geert De Jaeger. 2018. “Recent Trends in Plant Protein Complex Analysis in a Developmental Context.” Frontiers in Plant Science 9.
APA
Bontinck, M., Van Leene, J., Gadeyne, A., De Rybel, B., Eeckhout, D., Nelissen, H., & De Jaeger, G. (2018). Recent trends in plant protein complex analysis in a developmental context. FRONTIERS IN PLANT SCIENCE, 9.
Vancouver
1.
Bontinck M, Van Leene J, Gadeyne A, De Rybel B, Eeckhout D, Nelissen H, et al. Recent trends in plant protein complex analysis in a developmental context. FRONTIERS IN PLANT SCIENCE. 2018;9.
MLA
Bontinck, Michiel, Jelle Van Leene, Astrid Gadeyne, et al. “Recent Trends in Plant Protein Complex Analysis in a Developmental Context.” FRONTIERS IN PLANT SCIENCE 9 (2018): n. pag. Print.
@article{8567876,
  abstract     = {Because virtually all proteins interact with other proteins, studying protein-protein interactions (PPIs) is fundamental in understanding protein function. This is especially true when studying specific developmental processes, in which proteins often make developmental stage-or tissue specific interactions. However, studying these specific PPIs in planta can be challenging. One of the most widely adopted methods to study PPIs in planta is affinity purification coupled to mass spectrometry (AP/MS). Recent developments in the field of mass spectrometry have boosted applications of AP/MS in a developmental context. This review covers two main advancements in the field of affinity purification to study plant developmental processes: increasing the developmental resolution of the harvested tissues and moving from affinity purification to affinity enrichment. Furthermore, we discuss some new affinity purification approaches that have recently emerged and could have a profound impact on the future of protein interactome analysis in plants.},
  articleno    = {640},
  author       = {Bontinck, Michiel and Van Leene, Jelle and Gadeyne, Astrid and De Rybel, Bert and Eeckhout, Dominique and Nelissen, Hilde and De Jaeger, Geert},
  issn         = {1664-462X},
  journal      = {FRONTIERS IN PLANT SCIENCE},
  keyword      = {TANDEM AFFINITY PURIFICATION,CELL-CYCLE INTERACTOME,MASS-SPECTROMETRY,ARABIDOPSIS-THALIANA,FLOWER DEVELOPMENT,TRANSCRIPTION FACTORS,GENE-EXPRESSION,SUSPENSION-CULTURES,LEAF DEVELOPMENT,ROOT DEVELOPMENT,plant development,affinity enrichment,tandem affinity purification,Arabidopsis thaliana,interactomics,proximity-dependent labeling},
  language     = {eng},
  pages        = {14},
  title        = {Recent trends in plant protein complex analysis in a developmental context},
  url          = {http://dx.doi.org/10.3389/fpls.2018.00640},
  volume       = {9},
  year         = {2018},
}

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