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RNAcentral : a comprehensive database of non-coding RNA sequences

Anton I Petrov, Simon JE Kay, Ioanna Kalvari, Kevin L Howe, Kristian A Gray, Elspeth A Bruford, Paul J Kersey, Guy Cochrane, Robert D Finn, Alex Bateman, et al. (2017) NUCLEIC ACIDS RESEARCH. 45(D1). p.D128-D134
abstract
RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
GENOME DATABASE, GENE DATABASE, MICRORNAS, RESOURCE, REVEALS, UPDATE, TRANSCRIPTS, EXPRESSION, LANDSCAPE, TARGETS
journal title
NUCLEIC ACIDS RESEARCH
Nucleic Acids Res.
volume
45
issue
D1
pages
D128 - D134
Web of Science type
Article
Web of Science id
000396575500020
ISSN
0305-1048
1362-4962
DOI
10.1093/nar/gkw1008
language
English
UGent publication?
yes
classification
A1
copyright statement
Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
id
8538789
handle
http://hdl.handle.net/1854/LU-8538789
date created
2017-11-23 13:22:25
date last changed
2017-11-23 13:24:52
@article{8538789,
  abstract     = {RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.},
  author       = {Petrov, Anton I and Kay, Simon JE and Kalvari, Ioanna and Howe, Kevin L and Gray, Kristian A and Bruford, Elspeth A and Kersey, Paul J and Cochrane, Guy and Finn, Robert D and Bateman, Alex and Kozomara, Ana and Griffiths-Jones, Sam and Frankish, Adam and Zwieb, Christian W and Lau, Britney Y and Williams, Kelly P and Chan, Patricia P and Lowe, Todd M and Cannone, Jamie J and Gutell, Robin R and Machnicka, Magdalena A. and Bujnicki, Janusz M and Yoshihama, Maki and Kenmochi, Naoya and Chai, Benli and Cole, James R and Szymanski, Maciej and Karlowski, Wojciech M and Wood, Valerie and Huala, Eva and Berardini, Tanya Z and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Paraskevopoulou, Maria D and Vlachos, Ioannis S and Hatzigeorgiou, Artemis G and Ma, Lina and Zhang, Zhang and Puetz, Joern and Stadler, Peter F and McDonald, Daniel and Basu, Siddhartha and Fey, Petra and Engel, Stacia R and Cherry, J Michael and Volders, Pieter-Jan and Mestdagh, Pieter and Wower, Jacek and Clark, Michael and Quek, Xiu Cheng and Dinger, Marcel E},
  issn         = {0305-1048},
  journal      = {NUCLEIC ACIDS RESEARCH},
  keyword      = {GENOME DATABASE,GENE DATABASE,MICRORNAS,RESOURCE,REVEALS,UPDATE,TRANSCRIPTS,EXPRESSION,LANDSCAPE,TARGETS},
  language     = {eng},
  number       = {D1},
  pages        = {D128--D134},
  title        = {RNAcentral : a comprehensive database of non-coding RNA sequences},
  url          = {http://dx.doi.org/10.1093/nar/gkw1008},
  volume       = {45},
  year         = {2017},
}

Chicago
Petrov, Anton I, Simon JE Kay, Ioanna Kalvari, Kevin L Howe, Kristian A Gray, Elspeth A Bruford, Paul J Kersey, et al. 2017. “RNAcentral : a Comprehensive Database of Non-coding RNA Sequences.” Nucleic Acids Research 45 (D1): D128–D134.
APA
Petrov, A. I., Kay, S. J., Kalvari, I., Howe, K. L., Gray, K. A., Bruford, E. A., Kersey, P. J., et al. (2017). RNAcentral : a comprehensive database of non-coding RNA sequences. NUCLEIC ACIDS RESEARCH, 45(D1), D128–D134.
Vancouver
1.
Petrov AI, Kay SJ, Kalvari I, Howe KL, Gray KA, Bruford EA, et al. RNAcentral : a comprehensive database of non-coding RNA sequences. NUCLEIC ACIDS RESEARCH. 2017;45(D1):D128–D134.
MLA
Petrov, Anton I, Simon JE Kay, Ioanna Kalvari, et al. “RNAcentral : a Comprehensive Database of Non-coding RNA Sequences.” NUCLEIC ACIDS RESEARCH 45.D1 (2017): D128–D134. Print.