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A Cytoscape app for motif enumeration with ISMAGS

Thomas Van Parys (UGent) , Ine Melckenbeeck (UGent) , Maarten Houbraken (UGent) , Pieter Audenaert (UGent) , Didier Colle (UGent) , Mario Pickavet (UGent) , Piet Demeester (UGent) and Yves Van de Peer (UGent)
(2017) BIOINFORMATICS. 33(3). p.461-463
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Bioinformatics: from nucleotids to networks (N2N)
Abstract
We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif's symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis.
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IBCN

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Citation

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Chicago
Van Parys, Thomas, Ine Melckenbeeck, Maarten Houbraken, Pieter Audenaert, Didier Colle, Mario Pickavet, Piet Demeester, and Yves Van de Peer. 2017. “A Cytoscape App for Motif Enumeration with ISMAGS.” Bioinformatics 33 (3): 461–463.
APA
Van Parys, T., Melckenbeeck, I., Houbraken, M., Audenaert, P., Colle, D., Pickavet, M., Demeester, P., et al. (2017). A Cytoscape app for motif enumeration with ISMAGS. BIOINFORMATICS, 33(3), 461–463.
Vancouver
1.
Van Parys T, Melckenbeeck I, Houbraken M, Audenaert P, Colle D, Pickavet M, et al. A Cytoscape app for motif enumeration with ISMAGS. BIOINFORMATICS. 2017;33(3):461–3.
MLA
Van Parys, Thomas, Ine Melckenbeeck, Maarten Houbraken, et al. “A Cytoscape App for Motif Enumeration with ISMAGS.” BIOINFORMATICS 33.3 (2017): 461–463. Print.
@article{8517123,
  abstract     = {We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif's symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis.},
  author       = {Van Parys, Thomas and Melckenbeeck, Ine and Houbraken, Maarten and Audenaert, Pieter and Colle, Didier and Pickavet, Mario and Demeester, Piet and Van de Peer, Yves},
  issn         = {1367-4803},
  journal      = {BIOINFORMATICS},
  keyword      = {IBCN},
  language     = {eng},
  number       = {3},
  pages        = {461--463},
  title        = {A Cytoscape app for motif enumeration with ISMAGS},
  url          = {http://dx.doi.org/10.1093/bioinformatics/btw626},
  volume       = {33},
  year         = {2017},
}

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