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A guide to the PLAZA 3.0 plant comparative genomic database

Klaas Vandepoele UGent (2017) Plant genomics databases : methods and protocols. In Methods in Molecular Biology 1533. p.183-200
abstract
PLAZA 3.0 is an online resource for comparative genomics and offers a versatile platform to study gene functions and gene families or to analyze genome organization and evolution in the green plant lineage. Starting from genome sequence information for over 35 plant species, precomputed comparative genomic data sets cover homologous gene families, multiple sequence alignments, phylogenetic trees, and genomic colinearity information within and between species. Complementary functional data sets, a Workbench, and interactive visualization tools are available through a user-friendly web interface, making PLAZA an excellent starting point to translate sequence or omics data sets into biological knowledge. PLAZA is available at http://bioinformatics.psb.ugent.be/plaza/ .
Please use this url to cite or link to this publication:
author
organization
year
type
bookChapter
publication status
published
subject
keyword
Comparative genomics, Gene family, Gene functions, Orthology, Plants
book title
Plant genomics databases : methods and protocols
editor
Aalt DJ van Dijk
series title
Methods in Molecular Biology
volume
1533
pages
183 - 200
publisher
Springer
place of publication
New York, NY, USA
ISSN
1064-3745
1940-6029
ISBN
9781493966561
9781493966585
DOI
10.1007/978-1-4939-6658-5_10
project
Bioinformatics: from nucleotids to networks (N2N)
language
English
UGent publication?
yes
classification
B2
copyright statement
I have transferred the copyright for this publication to the publisher
id
8500207
handle
http://hdl.handle.net/1854/LU-8500207
date created
2016-12-22 10:11:38
date last changed
2017-01-03 08:39:43
@incollection{8500207,
  abstract     = {PLAZA 3.0 is an online resource for comparative genomics and offers a versatile platform to study gene functions and gene families or to analyze genome organization and evolution in the green plant lineage. Starting from genome sequence information for over 35 plant species, precomputed comparative genomic data sets cover homologous gene families, multiple sequence alignments, phylogenetic trees, and genomic colinearity information within and between species. Complementary functional data sets, a Workbench, and interactive visualization tools are available through a user-friendly web interface, making PLAZA an excellent starting point to translate sequence or omics data sets into biological knowledge. PLAZA is available at http://bioinformatics.psb.ugent.be/plaza/ .},
  author       = {Vandepoele, Klaas},
  booktitle    = {Plant genomics databases : methods and protocols},
  editor       = {van Dijk, Aalt DJ},
  isbn         = {9781493966561},
  issn         = {1064-3745},
  keyword      = {Comparative genomics,Gene family,Gene functions,Orthology,Plants},
  language     = {eng},
  pages        = {183--200},
  publisher    = {Springer},
  series       = {Methods in Molecular Biology},
  title        = {A guide to the PLAZA 3.0 plant comparative genomic database},
  url          = {http://dx.doi.org/10.1007/978-1-4939-6658-5\_10},
  volume       = {1533},
  year         = {2017},
}

Chicago
Vandepoele, Klaas. 2017. “A Guide to the PLAZA 3.0 Plant Comparative Genomic Database.” In Plant Genomics Databases : Methods and Protocols, ed. Aalt DJ van Dijk, 1533:183–200. New York, NY, USA: Springer.
APA
Vandepoele, K. (2017). A guide to the PLAZA 3.0 plant comparative genomic database. In A. D. van Dijk (Ed.), Plant genomics databases : methods and protocols (Vol. 1533, pp. 183–200). New York, NY, USA: Springer.
Vancouver
1.
Vandepoele K. A guide to the PLAZA 3.0 plant comparative genomic database. In: van Dijk AD, editor. Plant genomics databases : methods and protocols. New York, NY, USA: Springer; 2017. p. 183–200.
MLA
Vandepoele, Klaas. “A Guide to the PLAZA 3.0 Plant Comparative Genomic Database.” Plant Genomics Databases : Methods and Protocols. Ed. Aalt DJ van Dijk. Vol. 1533. New York, NY, USA: Springer, 2017. 183–200. Print.