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A guide to the PLAZA 3.0 plant comparative genomic database

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Bioinformatics: from nucleotids to networks (N2N)
Abstract
PLAZA 3.0 is an online resource for comparative genomics and offers a versatile platform to study gene functions and gene families or to analyze genome organization and evolution in the green plant lineage. Starting from genome sequence information for over 35 plant species, precomputed comparative genomic data sets cover homologous gene families, multiple sequence alignments, phylogenetic trees, and genomic colinearity information within and between species. Complementary functional data sets, a Workbench, and interactive visualization tools are available through a user-friendly web interface, making PLAZA an excellent starting point to translate sequence or omics data sets into biological knowledge. PLAZA is available at http://bioinformatics.psb.ugent.be/plaza/ .
Keywords
Comparative genomics, Gene family, Gene functions, Orthology, Plants

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Citation

Please use this url to cite or link to this publication:

Chicago
Vandepoele, Klaas. 2017. “A Guide to the PLAZA 3.0 Plant Comparative Genomic Database.” In Plant Genomics Databases : Methods and Protocols, ed. Aalt DJ van Dijk, 1533:183–200. New York, NY, USA: Springer.
APA
Vandepoele, Klaas. (2017). A guide to the PLAZA 3.0 plant comparative genomic database. In A. D. van Dijk (Ed.), Plant genomics databases : methods and protocols (Vol. 1533, pp. 183–200). New York, NY, USA: Springer.
Vancouver
1.
Vandepoele K. A guide to the PLAZA 3.0 plant comparative genomic database. In: van Dijk AD, editor. Plant genomics databases : methods and protocols. New York, NY, USA: Springer; 2017. p. 183–200.
MLA
Vandepoele, Klaas. “A Guide to the PLAZA 3.0 Plant Comparative Genomic Database.” Plant Genomics Databases : Methods and Protocols. Ed. Aalt DJ van Dijk. Vol. 1533. New York, NY, USA: Springer, 2017. 183–200. Print.
@incollection{8500207,
  abstract     = {PLAZA 3.0 is an online resource for comparative genomics and offers a versatile platform to study gene functions and gene families or to analyze genome organization and evolution in the green plant lineage. Starting from genome sequence information for over 35 plant species, precomputed comparative genomic data sets cover homologous gene families, multiple sequence alignments, phylogenetic trees, and genomic colinearity information within and between species. Complementary functional data sets, a Workbench, and interactive visualization tools are available through a user-friendly web interface, making PLAZA an excellent starting point to translate sequence or omics data sets into biological knowledge. PLAZA is available at http://bioinformatics.psb.ugent.be/plaza/ .},
  author       = {Vandepoele, Klaas},
  booktitle    = {Plant genomics databases : methods and protocols},
  editor       = {van Dijk, Aalt DJ},
  isbn         = {9781493966561},
  issn         = {1064-3745},
  keyword      = {Comparative genomics,Gene family,Gene functions,Orthology,Plants},
  language     = {eng},
  pages        = {183--200},
  publisher    = {Springer},
  series       = {Methods in Molecular Biology},
  title        = {A guide to the PLAZA 3.0 plant comparative genomic database},
  url          = {http://dx.doi.org/10.1007/978-1-4939-6658-5\_10},
  volume       = {1533},
  year         = {2017},
}

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