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Profiling of the early nitrogen stress response in the diatom Phaeodactylum tricornutum reveals a novel family of RING-domain transcription factors

Michiel Matthijs (UGent) , Michele Fabris (UGent) , Stefan Broos (UGent) , Wim Vyverman (UGent) and Alain Goossens (UGent)
(2016) PLANT PHYSIOLOGY. 170(1). p.489-498
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Abstract
Diatoms often inhabit highly variable habitats where they are confronted with a wide variety of stresses, frequently including starvation of nutrients such as nitrogen. In this study, the transcriptome of the model diatom Phaeodactylum tricornutum was profiled during the onset of nitrogen starvation by RNA sequencing, and overrepresented motifs were determined in promoters of genes that were early and strongly up-regulated during the nitrogen stress response. One of these motifs could be bound by a nitrogen starvation-inducible RING-domain protein termed RING-GAF-Gln-containing protein (RGQ1), which was shown to act as a transcription factor and belongs to a previously uncharacterized family that is conserved in heterokont algae.
Keywords
PATHWAY, ALGAE, PROTEINS, LIMITATION, ARABIDOPSIS, METABOLISM, MARINE, LIPID-ACCUMULATION, EVOLUTION, GENOME

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MLA
Matthijs, Michiel, et al. “Profiling of the Early Nitrogen Stress Response in the Diatom Phaeodactylum Tricornutum Reveals a Novel Family of RING-Domain Transcription Factors.” PLANT PHYSIOLOGY, vol. 170, no. 1, 2016, pp. 489–98, doi:10.1104/pp.15.01300.
APA
Matthijs, M., Fabris, M., Broos, S., Vyverman, W., & Goossens, A. (2016). Profiling of the early nitrogen stress response in the diatom Phaeodactylum tricornutum reveals a novel family of RING-domain transcription factors. PLANT PHYSIOLOGY, 170(1), 489–498. https://doi.org/10.1104/pp.15.01300
Chicago author-date
Matthijs, Michiel, Michele Fabris, Stefan Broos, Wim Vyverman, and Alain Goossens. 2016. “Profiling of the Early Nitrogen Stress Response in the Diatom Phaeodactylum Tricornutum Reveals a Novel Family of RING-Domain Transcription Factors.” PLANT PHYSIOLOGY 170 (1): 489–98. https://doi.org/10.1104/pp.15.01300.
Chicago author-date (all authors)
Matthijs, Michiel, Michele Fabris, Stefan Broos, Wim Vyverman, and Alain Goossens. 2016. “Profiling of the Early Nitrogen Stress Response in the Diatom Phaeodactylum Tricornutum Reveals a Novel Family of RING-Domain Transcription Factors.” PLANT PHYSIOLOGY 170 (1): 489–498. doi:10.1104/pp.15.01300.
Vancouver
1.
Matthijs M, Fabris M, Broos S, Vyverman W, Goossens A. Profiling of the early nitrogen stress response in the diatom Phaeodactylum tricornutum reveals a novel family of RING-domain transcription factors. PLANT PHYSIOLOGY. 2016;170(1):489–98.
IEEE
[1]
M. Matthijs, M. Fabris, S. Broos, W. Vyverman, and A. Goossens, “Profiling of the early nitrogen stress response in the diatom Phaeodactylum tricornutum reveals a novel family of RING-domain transcription factors,” PLANT PHYSIOLOGY, vol. 170, no. 1, pp. 489–498, 2016.
@article{7169842,
  abstract     = {{Diatoms often inhabit highly variable habitats where they are confronted with a wide variety of stresses, frequently including starvation of nutrients such as nitrogen. In this study, the transcriptome of the model diatom Phaeodactylum tricornutum was profiled during the onset of nitrogen starvation by RNA sequencing, and overrepresented motifs were determined in promoters of genes that were early and strongly up-regulated during the nitrogen stress response. One of these motifs could be bound by a nitrogen starvation-inducible RING-domain protein termed RING-GAF-Gln-containing protein (RGQ1), which was shown to act as a transcription factor and belongs to a previously uncharacterized family that is conserved in heterokont algae.}},
  author       = {{Matthijs, Michiel and Fabris, Michele and Broos, Stefan and Vyverman, Wim and Goossens, Alain}},
  issn         = {{0032-0889}},
  journal      = {{PLANT PHYSIOLOGY}},
  keywords     = {{PATHWAY,ALGAE,PROTEINS,LIMITATION,ARABIDOPSIS,METABOLISM,MARINE,LIPID-ACCUMULATION,EVOLUTION,GENOME}},
  language     = {{eng}},
  number       = {{1}},
  pages        = {{489--498}},
  title        = {{Profiling of the early nitrogen stress response in the diatom Phaeodactylum tricornutum reveals a novel family of RING-domain transcription factors}},
  url          = {{http://doi.org/10.1104/pp.15.01300}},
  volume       = {{170}},
  year         = {{2016}},
}

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