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The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution

Guo-Qiang Zhang, Qing Xu, Chao Bian, Wen-Chieh Tsai, Chuan-Ming Yeh, Ke-Wei Liu, Kouki Yoshida, Liang-Sheng Zhang, Song-Bin Chang, Fei Chen, et al. (2016) SCIENTIFIC REPORTS. 6.
abstract
Orchids make up about 10% of all seed plant species, have great economical value, and are of specific scientific interest because of their renowned flowers and ecological adaptations. Here, we report the first draft genome sequence of a lithophytic orchid, Dendrobium catenatum. We predict 28,910 protein-coding genes, and find evidence of a whole genome duplication shared with Phalaenopsis. We observed the expansion of many resistance-related genes, suggesting a powerful immune system responsible for adaptation to a wide range of ecological niches. We also discovered extensive duplication of genes involved in glucomannan synthase activities, likely related to the synthesis of medicinal polysaccharides. Expansion of MADS-box gene clades ANR1, StMADS11, and MIKC*, involved in the regulation of development and growth, suggests that these expansions are associated with the astonishing diversity of plant architecture in the genus Dendrobium. On the contrary, members of the type I MADS box gene family are missing, which might explain the loss of the endospermous seed. The findings reported here will be important for future studies into polysaccharide synthesis, adaptations to diverse environments and flower architecture of Orchidaceae.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
ARABIDOPSIS-THALIANA, MADS-BOX GENE, MAXIMUM-LIKELIHOOD, STRESS TOLERANCE, WIDE ANALYSIS, FAMILY, PLANTS, TOOL, ORCHID, RICE
journal title
SCIENTIFIC REPORTS
Sci. Rep.
volume
6
article number
19029
pages
10 pages
Web of Science type
Article
Web of Science id
000368108300003
JCR category
MULTIDISCIPLINARY SCIENCES
JCR impact factor
4.259 (2016)
JCR rank
10/64 (2016)
JCR quartile
1 (2016)
ISSN
2045-2322
DOI
10.1038/srep19029
project
Bioinformatics: from nucleotids to networks (N2N)
language
English
UGent publication?
yes
classification
A1
copyright statement
I have retained and own the full copyright for this publication
id
7082063
handle
http://hdl.handle.net/1854/LU-7082063
date created
2016-02-11 15:32:36
date last changed
2016-12-21 15:41:31
@article{7082063,
  abstract     = {Orchids make up about 10\% of all seed plant species, have great economical value, and are of specific scientific interest because of their renowned flowers and ecological adaptations. Here, we report the first draft genome sequence of a lithophytic orchid, Dendrobium catenatum. We predict 28,910 protein-coding genes, and find evidence of a whole genome duplication shared with Phalaenopsis. We observed the expansion of many resistance-related genes, suggesting a powerful immune system responsible for adaptation to a wide range of ecological niches. We also discovered extensive duplication of genes involved in glucomannan synthase activities, likely related to the synthesis of medicinal polysaccharides. Expansion of MADS-box gene clades ANR1, StMADS11, and MIKC*, involved in the regulation of development and growth, suggests that these expansions are associated with the astonishing diversity of plant architecture in the genus Dendrobium. On the contrary, members of the type I MADS box gene family are missing, which might explain the loss of the endospermous seed. The findings reported here will be important for future studies into polysaccharide synthesis, adaptations to diverse environments and flower architecture of Orchidaceae.},
  articleno    = {19029},
  author       = {Zhang, Guo-Qiang and Xu, Qing and Bian, Chao and Tsai, Wen-Chieh and Yeh, Chuan-Ming and Liu, Ke-Wei and Yoshida, Kouki and Zhang, Liang-Sheng and Chang, Song-Bin and Chen, Fei and Shi, Yu and Su, Yong-Yu and Zhang, Yong-Qiang and Chen, Li-Jun and Yin, Yayi and Lin, Min and Huang, Huixia and Deng, Hua and Wang, Zhi-Wen and Zhu, Shi-Lin and Zhao, Xiang and Deng, Cao and Niu, Shan-Ce and Huang, Jie and Wang, Meina and Liu, Guo-Hui and Yang, Hai-Jun and Xiao, Xin-Ju and Hsiao, Yu-Yun and Wu, Wan-Lin and Chen, You-Yi and Mitsuda, Nobutaka and Ohme-Takagi, Masaru and Luo, Yi-Bo and Van de Peer, Yves and Liu, Zhong-Jian},
  issn         = {2045-2322},
  journal      = {SCIENTIFIC REPORTS},
  keyword      = {ARABIDOPSIS-THALIANA,MADS-BOX GENE,MAXIMUM-LIKELIHOOD,STRESS TOLERANCE,WIDE ANALYSIS,FAMILY,PLANTS,TOOL,ORCHID,RICE},
  language     = {eng},
  pages        = {10},
  title        = {The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution},
  url          = {http://dx.doi.org/10.1038/srep19029},
  volume       = {6},
  year         = {2016},
}

Chicago
Zhang, Guo-Qiang, Qing Xu, Chao Bian, Wen-Chieh Tsai, Chuan-Ming Yeh, Ke-Wei Liu, Kouki Yoshida, et al. 2016. “The Dendrobium Catenatum Lindl. Genome Sequence Provides Insights into Polysaccharide Synthase, Floral Development and Adaptive Evolution.” Scientific Reports 6.
APA
Zhang, G.-Q., Xu, Q., Bian, C., Tsai, W.-C., Yeh, C.-M., Liu, K.-W., Yoshida, K., et al. (2016). The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution. SCIENTIFIC REPORTS, 6.
Vancouver
1.
Zhang G-Q, Xu Q, Bian C, Tsai W-C, Yeh C-M, Liu K-W, et al. The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution. SCIENTIFIC REPORTS. 2016;6.
MLA
Zhang, Guo-Qiang, Qing Xu, Chao Bian, et al. “The Dendrobium Catenatum Lindl. Genome Sequence Provides Insights into Polysaccharide Synthase, Floral Development and Adaptive Evolution.” SCIENTIFIC REPORTS 6 (2016): n. pag. Print.