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Tomato whole genome transcriptional response to Tetranychus urticae identifies divergence of spider mite-induced responses between tomato and Arabidopsis

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Abstract
The two-spotted spider mite Tetranychus urticae is one of the most significant mite pests in agriculture, feeding on more than 1,100 plant hosts, including model plants Arabidopsis thaliana and tomato, Solanum lycopersicum. Here, we describe timecourse tomato transcriptional responses to spider mite feeding and compare them with Arabidopsis in order to determine conserved and divergent defense responses to this pest. To refine the involvement of jasmonic acid (JA) in mite-induced responses and to improve tomato Gene Ontology annotations, we analyzed transcriptional changes in the tomato JA-signaling mutant defenseless1 (def-1) upon JA treatment and spider mite herbivory. Overlay of differentially expressed genes (DEG) identified in def-1 onto those from the timecourse experiment established that JA controls expression of the majority of genes differentially regulated by herbivory. Comparison of defense responses between tomato and Arabidopsis highlighted 96 orthologous genes (of 2,133 DEG) that were recruited for defense against spider mites in both species. These genes, involved in biosynthesis of JA, phenylpropanoids, flavonoids, and terpenoids, represent the conserved core of induced defenses. The remaining tomato DEG support the establishment of tomato-specific defenses, indicating profound divergence of spider mite-induced responses between tomato and Arabidopsis.
Keywords
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE GENE, PLANT SECONDARY METABOLISM, ALLENE OXIDE SYNTHASE, FALSE DISCOVERY RATE, RECEPTOR-LIKE KINASE, ETHYLENE RESPONSE, JASMONIC ACID, WILD TOMATO, LEUCINE AMINOPEPTIDASE, DEFENSE RESPONSES

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Chicago
Martel, Catherine, Vladimir Zhurov, Marie Navarro, Manuel Martinez, Marc Cazaux, Philippe Auger, Alain Migeon, et al. 2015. “Tomato Whole Genome Transcriptional Response to Tetranychus Urticae Identifies Divergence of Spider Mite-induced Responses Between Tomato and Arabidopsis.” Molecular Plant-microbe Interactions 28 (3): 343–361.
APA
Martel, C., Zhurov, V., Navarro, M., Martinez, M., Cazaux, M., Auger, P., Migeon, A., et al. (2015). Tomato whole genome transcriptional response to Tetranychus urticae identifies divergence of spider mite-induced responses between tomato and Arabidopsis. MOLECULAR PLANT-MICROBE INTERACTIONS, 28(3), 343–361.
Vancouver
1.
Martel C, Zhurov V, Navarro M, Martinez M, Cazaux M, Auger P, et al. Tomato whole genome transcriptional response to Tetranychus urticae identifies divergence of spider mite-induced responses between tomato and Arabidopsis. MOLECULAR PLANT-MICROBE INTERACTIONS. 2015;28(3):343–61.
MLA
Martel, Catherine, Vladimir Zhurov, Marie Navarro, et al. “Tomato Whole Genome Transcriptional Response to Tetranychus Urticae Identifies Divergence of Spider Mite-induced Responses Between Tomato and Arabidopsis.” MOLECULAR PLANT-MICROBE INTERACTIONS 28.3 (2015): 343–361. Print.
@article{5985915,
  abstract     = {The two-spotted spider mite Tetranychus urticae is one of the most significant mite pests in agriculture, feeding on more than 1,100 plant hosts, including model plants Arabidopsis thaliana and tomato, Solanum lycopersicum. Here, we describe timecourse tomato transcriptional responses to spider mite feeding and compare them with Arabidopsis in order to determine conserved and divergent defense responses to this pest. To refine the involvement of jasmonic acid (JA) in mite-induced responses and to improve tomato Gene Ontology annotations, we analyzed transcriptional changes in the tomato JA-signaling mutant defenseless1 (def-1) upon JA treatment and spider mite herbivory. Overlay of differentially expressed genes (DEG) identified in def-1 onto those from the timecourse experiment established that JA controls expression of the majority of genes differentially regulated by herbivory. Comparison of defense responses between tomato and Arabidopsis highlighted 96 orthologous genes (of 2,133 DEG) that were recruited for defense against spider mites in both species. These genes, involved in biosynthesis of JA, phenylpropanoids, flavonoids, and terpenoids, represent the conserved core of induced defenses. The remaining tomato DEG support the establishment of tomato-specific defenses, indicating profound divergence of spider mite-induced responses between tomato and Arabidopsis.},
  author       = {Martel, Catherine and Zhurov, Vladimir and Navarro, Marie and Martinez, Manuel and Cazaux, Marc and Auger, Philippe and Migeon, Alain and Santamaria, M Estrella and Wybouw, Nicky and Diaz, Isabel and Van Leeuwen, Thomas and Navajas, Maria and Grbic, Miodrag and Grbic, Vojislava},
  issn         = {0894-0282},
  journal      = {MOLECULAR PLANT-MICROBE INTERACTIONS},
  language     = {eng},
  number       = {3},
  pages        = {343--361},
  title        = {Tomato whole genome transcriptional response to Tetranychus urticae identifies divergence of spider mite-induced responses between tomato and Arabidopsis},
  url          = {http://dx.doi.org/10.1094/MPMI-09-14-0291-FI},
  volume       = {28},
  year         = {2015},
}

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