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The Unipept metaproteomics analysis pipeline

Bart Mesuere (UGent) , Griet Debyser (UGent) , Maarten Aerts (UGent) , Bart Devreese (UGent) , Peter Vandamme (UGent) and Peter Dawyndt (UGent)
(2015) PROTEOMICS. 15(8). p.1437-1442
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Abstract
Unipept (http://unipept.ugent.be) is a web application that offers a user-friendly way to explore the biodiversity of complex metaproteome samples by providing interactive visualizations. In this article, the updates and changes to Unipept since its initial release are presented. This includes the addition of interactive sunburst and treeview visualizations to the multipeptide analysis, the foundations of an application programming interface (API) and a command line interface, updated data sources, and the open-sourcing of the entire application under the MIT license.
Keywords
Tryptic peptides, Metaproteomics, Biodiversity analysis, Bioinformatics, Data visualization, DATABASE, SEQUENCES

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Citation

Please use this url to cite or link to this publication:

Chicago
Mesuere, Bart, Griet Debyser, Maarten Aerts, Bart Devreese, Peter Vandamme, and Peter Dawyndt. 2015. “The Unipept Metaproteomics Analysis Pipeline.” Proteomics 15 (8): 1437–1442.
APA
Mesuere, B., Debyser, G., Aerts, M., Devreese, B., Vandamme, P., & Dawyndt, P. (2015). The Unipept metaproteomics analysis pipeline. PROTEOMICS, 15(8), 1437–1442.
Vancouver
1.
Mesuere B, Debyser G, Aerts M, Devreese B, Vandamme P, Dawyndt P. The Unipept metaproteomics analysis pipeline. PROTEOMICS. 2015;15(8):1437–42.
MLA
Mesuere, Bart, Griet Debyser, Maarten Aerts, et al. “The Unipept Metaproteomics Analysis Pipeline.” PROTEOMICS 15.8 (2015): 1437–1442. Print.
@article{5917705,
  abstract     = {Unipept (http://unipept.ugent.be) is a web application that offers a user-friendly way to explore the biodiversity of complex metaproteome samples by providing interactive visualizations. In this article, the updates and changes to Unipept since its initial release are presented. This includes the addition of interactive sunburst and treeview visualizations to the multipeptide analysis, the foundations of an application programming interface (API) and a command line interface, updated data sources, and the open-sourcing of the entire application under the MIT license.},
  author       = {Mesuere, Bart and Debyser, Griet and Aerts, Maarten and Devreese, Bart and Vandamme, Peter and Dawyndt, Peter},
  issn         = {1615-9853},
  journal      = {PROTEOMICS},
  keyword      = {Tryptic peptides,Metaproteomics,Biodiversity analysis,Bioinformatics,Data visualization,DATABASE,SEQUENCES},
  language     = {eng},
  number       = {8},
  pages        = {1437--1442},
  title        = {The Unipept metaproteomics analysis pipeline},
  url          = {http://dx.doi.org/10.1002/pmic.201400361},
  volume       = {15},
  year         = {2015},
}

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