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Systemic suppression of the shoot metabolism upon rice root nematode infection

Tina Kyndt (UGent) , Simon Denil (UGent) , Lander Bauters (UGent) , Wim Van Criekinge (UGent) and Tim De Meyer (UGent)
(2014) PLOS ONE. 9(9).
Author
Organization
Project
Bioinformatics: from nucleotids to networks (N2N)
Abstract
Hirschmanniella oryzae is the most common plant-parasitic nematode in flooded rice cultivation systems. These migratory animals penetrate the plant roots and feed on the root cells, creating large cavities, extensive root necrosis and rotting. The objective of this study was to investigate the systemic response of the rice plant upon root infection by this nematode. RNA sequencing was applied on the above-ground parts of the rice plants at 3 and 7 days post inoculation. The data revealed significant modifications in the primary metabolism of the plant shoot, with a general suppression of for instance chlorophyll biosynthesis, the brassinosteroid pathway, and amino acid production. In the secondary metabolism, we detected a repression of the isoprenoid and shikimate pathways. These molecular changes can have dramatic consequences for the growth and yield of the rice plants, and could potentially change their susceptibility to above-ground pathogens and pests.
Keywords
KNOT, DEFENSE, EXPRESSION, RESPONSES, ARABIDOPSIS, BRASSINOSTEROIDS, RNA-SEQ, GIANT-CELLS, HIRSCHMANNIELLA-ORYZAE, TRANSCRIPTION FACTOR

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Citation

Please use this url to cite or link to this publication:

Chicago
Kyndt, Tina, Simon Denil, Lander Bauters, Wim Van Criekinge, and Tim De Meyer. 2014. “Systemic Suppression of the Shoot Metabolism Upon Rice Root Nematode Infection.” Plos One 9 (9).
APA
Kyndt, T., Denil, S., Bauters, L., Van Criekinge, W., & De Meyer, T. (2014). Systemic suppression of the shoot metabolism upon rice root nematode infection. PLOS ONE, 9(9).
Vancouver
1.
Kyndt T, Denil S, Bauters L, Van Criekinge W, De Meyer T. Systemic suppression of the shoot metabolism upon rice root nematode infection. PLOS ONE. 2014;9(9).
MLA
Kyndt, Tina, Simon Denil, Lander Bauters, et al. “Systemic Suppression of the Shoot Metabolism Upon Rice Root Nematode Infection.” PLOS ONE 9.9 (2014): n. pag. Print.
@article{5796720,
  abstract     = {Hirschmanniella oryzae is the most common plant-parasitic nematode in flooded rice cultivation systems. These migratory animals penetrate the plant roots and feed on the root cells, creating large cavities, extensive root necrosis and rotting. The objective of this study was to investigate the systemic response of the rice plant upon root infection by this nematode. RNA sequencing was applied on the above-ground parts of the rice plants at 3 and 7 days post inoculation. The data revealed significant modifications in the primary metabolism of the plant shoot, with a general suppression of for instance chlorophyll biosynthesis, the brassinosteroid pathway, and amino acid production. In the secondary metabolism, we detected a repression of the isoprenoid and shikimate pathways. These molecular changes can have dramatic consequences for the growth and yield of the rice plants, and could potentially change their susceptibility to above-ground pathogens and pests.},
  articleno    = {e106858},
  author       = {Kyndt, Tina and Denil, Simon and Bauters, Lander and Van Criekinge, Wim and De Meyer, Tim},
  issn         = {1932-6203},
  journal      = {PLOS ONE},
  keyword      = {KNOT,DEFENSE,EXPRESSION,RESPONSES,ARABIDOPSIS,BRASSINOSTEROIDS,RNA-SEQ,GIANT-CELLS,HIRSCHMANNIELLA-ORYZAE,TRANSCRIPTION FACTOR},
  language     = {eng},
  number       = {9},
  pages        = {11},
  title        = {Systemic suppression of the shoot metabolism upon rice root nematode infection},
  url          = {http://dx.doi.org/10.1371/journal.pone.0106858},
  volume       = {9},
  year         = {2014},
}

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