
Conservation of the extended substrate specificity profiles among homologous granzymes across species
- Author
- Kim Plasman (UGent) , Sebastian Maurer-Stroh, Jamshaid Ahmad, Han Hao, Dion Kaiserman, Fernanda L Sirota, Veronique Jonckheere (UGent) , Philip I Bird, Kris Gevaert (UGent) and Petra Van Damme (UGent)
- Organization
- Abstract
- Granzymes are structurally related serine proteases involved in cell death and immunity. To date four out of five human granzymes have assigned orthologs in mice; however for granzyme H, no murine ortholog has been suggested and its role in cytotoxicity remains controversial. Here, we demonstrate that, as is the case for granzyme C, human granzyme H is an inefficient cytotoxin that together with their similar pattern of GrB divergence and functional similarity strongly hint to their orthologous relationship. Besides analyzing the substrate specificity profile of granzyme H by substrate phage display, substrate cleavage susceptibility of human granzyme H and mouse granzyme C was assessed on a proteome-wide level. The extended specificity profiles of granzymes C and H (i.e. beyond cleavage positions P4-P4') match those previously observed for granzyme B. We demonstrate conservation of these extended specificity profiles among various granzymes as granzyme B cleavage susceptibility of an otherwise granzyme H/C specific cleavage site can simply be conferred by altering the P1-residue to aspartate, the preferred P1-residue of granzyme B. Our results thus indicate a conserved, but hitherto underappreciated specificity-determining role of extended protease-substrate contacts in steering cleavage susceptibility.
- Keywords
- TARGET-CELLS, PROTEIN, DIAGONAL CHROMATOGRAPHY, MOUSE GRANZYME, LYMPHOCYTES, PROTEOMICS, APOPTOSIS, DISPLAY, DIVERGENT, EXPRESSION
Downloads
-
(...).pdf
- full text
- |
- UGent only
- |
- |
- 2.18 MB
Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-5786319
- MLA
- Plasman, Kim, et al. “Conservation of the Extended Substrate Specificity Profiles among Homologous Granzymes across Species.” MOLECULAR & CELLULAR PROTEOMICS, vol. 12, no. 10, 2013, pp. 2921–34, doi:10.1074/mcp.M113.028670.
- APA
- Plasman, K., Maurer-Stroh, S., Ahmad, J., Hao, H., Kaiserman, D., Sirota, F. L., … Van Damme, P. (2013). Conservation of the extended substrate specificity profiles among homologous granzymes across species. MOLECULAR & CELLULAR PROTEOMICS, 12(10), 2921–2934. https://doi.org/10.1074/mcp.M113.028670
- Chicago author-date
- Plasman, Kim, Sebastian Maurer-Stroh, Jamshaid Ahmad, Han Hao, Dion Kaiserman, Fernanda L Sirota, Veronique Jonckheere, Philip I Bird, Kris Gevaert, and Petra Van Damme. 2013. “Conservation of the Extended Substrate Specificity Profiles among Homologous Granzymes across Species.” MOLECULAR & CELLULAR PROTEOMICS 12 (10): 2921–34. https://doi.org/10.1074/mcp.M113.028670.
- Chicago author-date (all authors)
- Plasman, Kim, Sebastian Maurer-Stroh, Jamshaid Ahmad, Han Hao, Dion Kaiserman, Fernanda L Sirota, Veronique Jonckheere, Philip I Bird, Kris Gevaert, and Petra Van Damme. 2013. “Conservation of the Extended Substrate Specificity Profiles among Homologous Granzymes across Species.” MOLECULAR & CELLULAR PROTEOMICS 12 (10): 2921–2934. doi:10.1074/mcp.M113.028670.
- Vancouver
- 1.Plasman K, Maurer-Stroh S, Ahmad J, Hao H, Kaiserman D, Sirota FL, et al. Conservation of the extended substrate specificity profiles among homologous granzymes across species. MOLECULAR & CELLULAR PROTEOMICS. 2013;12(10):2921–34.
- IEEE
- [1]K. Plasman et al., “Conservation of the extended substrate specificity profiles among homologous granzymes across species,” MOLECULAR & CELLULAR PROTEOMICS, vol. 12, no. 10, pp. 2921–2934, 2013.
@article{5786319, abstract = {{Granzymes are structurally related serine proteases involved in cell death and immunity. To date four out of five human granzymes have assigned orthologs in mice; however for granzyme H, no murine ortholog has been suggested and its role in cytotoxicity remains controversial. Here, we demonstrate that, as is the case for granzyme C, human granzyme H is an inefficient cytotoxin that together with their similar pattern of GrB divergence and functional similarity strongly hint to their orthologous relationship. Besides analyzing the substrate specificity profile of granzyme H by substrate phage display, substrate cleavage susceptibility of human granzyme H and mouse granzyme C was assessed on a proteome-wide level. The extended specificity profiles of granzymes C and H (i.e. beyond cleavage positions P4-P4') match those previously observed for granzyme B. We demonstrate conservation of these extended specificity profiles among various granzymes as granzyme B cleavage susceptibility of an otherwise granzyme H/C specific cleavage site can simply be conferred by altering the P1-residue to aspartate, the preferred P1-residue of granzyme B. Our results thus indicate a conserved, but hitherto underappreciated specificity-determining role of extended protease-substrate contacts in steering cleavage susceptibility.}}, author = {{Plasman, Kim and Maurer-Stroh, Sebastian and Ahmad, Jamshaid and Hao, Han and Kaiserman, Dion and Sirota, Fernanda L and Jonckheere, Veronique and Bird, Philip I and Gevaert, Kris and Van Damme, Petra}}, issn = {{1535-9476}}, journal = {{MOLECULAR & CELLULAR PROTEOMICS}}, keywords = {{TARGET-CELLS,PROTEIN,DIAGONAL CHROMATOGRAPHY,MOUSE GRANZYME,LYMPHOCYTES,PROTEOMICS,APOPTOSIS,DISPLAY,DIVERGENT,EXPRESSION}}, language = {{eng}}, number = {{10}}, pages = {{2921--2934}}, title = {{Conservation of the extended substrate specificity profiles among homologous granzymes across species}}, url = {{http://dx.doi.org/10.1074/mcp.M113.028670}}, volume = {{12}}, year = {{2013}}, }
- Altmetric
- View in Altmetric
- Web of Science
- Times cited: