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Conservation of the extended substrate specificity profiles among homologous granzymes across species

(2013) MOLECULAR & CELLULAR PROTEOMICS. 12(10). p.2921-2934
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Organization
Abstract
Granzymes are structurally related serine proteases involved in cell death and immunity. To date four out of five human granzymes have assigned orthologs in mice; however for granzyme H, no murine ortholog has been suggested and its role in cytotoxicity remains controversial. Here, we demonstrate that, as is the case for granzyme C, human granzyme H is an inefficient cytotoxin that together with their similar pattern of GrB divergence and functional similarity strongly hint to their orthologous relationship. Besides analyzing the substrate specificity profile of granzyme H by substrate phage display, substrate cleavage susceptibility of human granzyme H and mouse granzyme C was assessed on a proteome-wide level. The extended specificity profiles of granzymes C and H (i.e. beyond cleavage positions P4-P4') match those previously observed for granzyme B. We demonstrate conservation of these extended specificity profiles among various granzymes as granzyme B cleavage susceptibility of an otherwise granzyme H/C specific cleavage site can simply be conferred by altering the P1-residue to aspartate, the preferred P1-residue of granzyme B. Our results thus indicate a conserved, but hitherto underappreciated specificity-determining role of extended protease-substrate contacts in steering cleavage susceptibility.
Keywords
TARGET-CELLS, PROTEIN, DIAGONAL CHROMATOGRAPHY, MOUSE GRANZYME, LYMPHOCYTES, PROTEOMICS, APOPTOSIS, DISPLAY, DIVERGENT, EXPRESSION

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MLA
Plasman, Kim, et al. “Conservation of the Extended Substrate Specificity Profiles among Homologous Granzymes across Species.” MOLECULAR & CELLULAR PROTEOMICS, vol. 12, no. 10, 2013, pp. 2921–34, doi:10.1074/mcp.M113.028670.
APA
Plasman, K., Maurer-Stroh, S., Ahmad, J., Hao, H., Kaiserman, D., Sirota, F. L., … Van Damme, P. (2013). Conservation of the extended substrate specificity profiles among homologous granzymes across species. MOLECULAR & CELLULAR PROTEOMICS, 12(10), 2921–2934. https://doi.org/10.1074/mcp.M113.028670
Chicago author-date
Plasman, Kim, Sebastian Maurer-Stroh, Jamshaid Ahmad, Han Hao, Dion Kaiserman, Fernanda L Sirota, Veronique Jonckheere, Philip I Bird, Kris Gevaert, and Petra Van Damme. 2013. “Conservation of the Extended Substrate Specificity Profiles among Homologous Granzymes across Species.” MOLECULAR & CELLULAR PROTEOMICS 12 (10): 2921–34. https://doi.org/10.1074/mcp.M113.028670.
Chicago author-date (all authors)
Plasman, Kim, Sebastian Maurer-Stroh, Jamshaid Ahmad, Han Hao, Dion Kaiserman, Fernanda L Sirota, Veronique Jonckheere, Philip I Bird, Kris Gevaert, and Petra Van Damme. 2013. “Conservation of the Extended Substrate Specificity Profiles among Homologous Granzymes across Species.” MOLECULAR & CELLULAR PROTEOMICS 12 (10): 2921–2934. doi:10.1074/mcp.M113.028670.
Vancouver
1.
Plasman K, Maurer-Stroh S, Ahmad J, Hao H, Kaiserman D, Sirota FL, et al. Conservation of the extended substrate specificity profiles among homologous granzymes across species. MOLECULAR & CELLULAR PROTEOMICS. 2013;12(10):2921–34.
IEEE
[1]
K. Plasman et al., “Conservation of the extended substrate specificity profiles among homologous granzymes across species,” MOLECULAR & CELLULAR PROTEOMICS, vol. 12, no. 10, pp. 2921–2934, 2013.
@article{5786319,
  abstract     = {{Granzymes are structurally related serine proteases involved in cell death and immunity. To date four out of five human granzymes have assigned orthologs in mice; however for granzyme H, no murine ortholog has been suggested and its role in cytotoxicity remains controversial. Here, we demonstrate that, as is the case for granzyme C, human granzyme H is an inefficient cytotoxin that together with their similar pattern of GrB divergence and functional similarity strongly hint to their orthologous relationship. Besides analyzing the substrate specificity profile of granzyme H by substrate phage display, substrate cleavage susceptibility of human granzyme H and mouse granzyme C was assessed on a proteome-wide level. The extended specificity profiles of granzymes C and H (i.e. beyond cleavage positions P4-P4') match those previously observed for granzyme B. We demonstrate conservation of these extended specificity profiles among various granzymes as granzyme B cleavage susceptibility of an otherwise granzyme H/C specific cleavage site can simply be conferred by altering the P1-residue to aspartate, the preferred P1-residue of granzyme B. Our results thus indicate a conserved, but hitherto underappreciated specificity-determining role of extended protease-substrate contacts in steering cleavage susceptibility.}},
  author       = {{Plasman, Kim and Maurer-Stroh, Sebastian and Ahmad, Jamshaid and Hao, Han and Kaiserman, Dion and Sirota, Fernanda L and Jonckheere, Veronique and Bird, Philip I and Gevaert, Kris and Van Damme, Petra}},
  issn         = {{1535-9476}},
  journal      = {{MOLECULAR & CELLULAR PROTEOMICS}},
  keywords     = {{TARGET-CELLS,PROTEIN,DIAGONAL CHROMATOGRAPHY,MOUSE GRANZYME,LYMPHOCYTES,PROTEOMICS,APOPTOSIS,DISPLAY,DIVERGENT,EXPRESSION}},
  language     = {{eng}},
  number       = {{10}},
  pages        = {{2921--2934}},
  title        = {{Conservation of the extended substrate specificity profiles among homologous granzymes across species}},
  url          = {{http://dx.doi.org/10.1074/mcp.M113.028670}},
  volume       = {{12}},
  year         = {{2013}},
}

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