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Resilience in the proteomics data ecosystem: how the field cares for its data

Lennart Martens (UGent)
(2013) PROTEOMICS. 13(10-11). p.1548-1550
Author
Organization
Project
Bioinformatics: from nucleotids to networks (N2N)
Abstract
The public dissemination of data is an integral part of the life sciences. In the field of proteomics too, data sharing has taken off over the last few years, with the first downstream uses of these data quickly gaining prominence. At the same time, the recent unfortunate demise of two repositories, NCBI Peptidome and ProteomeCommons Tranche, has shown the frailty of such data gathering efforts. Heroic efforts by the PRIDE and Peptidome teams to rescue the Peptidome data have now ensured their continued availability to the field, and alternatives have already been put in place for Tranche. But with public data increasingly at the hub of the life sciences, it is a good time to look at the proteomics data ecosystem in some more detail.
Keywords
IDENTIFICATIONS, MIAPE, MASS-SPECTROMETRY, Standards, Public repositories, Bioinformatics

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Citation

Please use this url to cite or link to this publication:

Chicago
Martens, Lennart. 2013. “Resilience in the Proteomics Data Ecosystem: How the Field Cares for Its Data.” Proteomics 13 (10-11): 1548–1550.
APA
Martens, Lennart. (2013). Resilience in the proteomics data ecosystem: how the field cares for its data. PROTEOMICS, 13(10-11), 1548–1550.
Vancouver
1.
Martens L. Resilience in the proteomics data ecosystem: how the field cares for its data. PROTEOMICS. 2013;13(10-11):1548–50.
MLA
Martens, Lennart. “Resilience in the Proteomics Data Ecosystem: How the Field Cares for Its Data.” PROTEOMICS 13.10-11 (2013): 1548–1550. Print.
@article{4166053,
  abstract     = {The public dissemination of data is an integral part of the life sciences. In the field of proteomics too, data sharing has taken off over the last few years, with the first downstream uses of these data quickly gaining prominence. At the same time, the recent unfortunate demise of two repositories, NCBI Peptidome and ProteomeCommons Tranche, has shown the frailty of such data gathering efforts. Heroic efforts by the PRIDE and Peptidome teams to rescue the Peptidome data have now ensured their continued availability to the field, and alternatives have already been put in place for Tranche. But with public data increasingly at the hub of the life sciences, it is a good time to look at the proteomics data ecosystem in some more detail.},
  author       = {Martens, Lennart},
  issn         = {1615-9853},
  journal      = {PROTEOMICS},
  keyword      = {IDENTIFICATIONS,MIAPE,MASS-SPECTROMETRY,Standards,Public repositories,Bioinformatics},
  language     = {eng},
  number       = {10-11},
  pages        = {1548--1550},
  title        = {Resilience in the proteomics data ecosystem: how the field cares for its data},
  url          = {http://dx.doi.org/10.1002/pmic.201300118},
  volume       = {13},
  year         = {2013},
}

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