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Genome-wide identification of NBS resistance genes in Populus trichocarpa

Annegret Kohler, Cécile Rinaldi, Sébastien Duplessis, Marie Baucher UGent, Danny Geelen UGent, Frédéric Duchaussoy, Blake C Meyers, Wout Boerjan UGent and Francis Martin (2008) PLANT MOLECULAR BIOLOGY. 66(6). p.619-636
abstract
As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ("NBS-LRR genes") play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of similar to 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
DEFENSE, RESPONSES, DELTOIDES, SEQUENCE, HYBRID POPLAR, RUST RESISTANCE, ARABIDOPSIS-THALIANA, LRR PROTEINS, DISEASE-RESISTANCE, MELAMPSORA-LARICI-POPULINA, resistance, Populus, NBS-LRR
journal title
PLANT MOLECULAR BIOLOGY
Plant Mol. Biol.
volume
66
issue
6
pages
619 - 636
Web of Science type
Article
Web of Science id
000254114700005
JCR category
PLANT SCIENCES
JCR impact factor
3.541 (2008)
JCR rank
21/155 (2008)
JCR quartile
1 (2008)
ISSN
0167-4412
DOI
10.1007/s11103-008-9293-9
language
English
UGent publication?
yes
classification
A1
copyright statement
I have transferred the copyright for this publication to the publisher
id
414580
handle
http://hdl.handle.net/1854/LU-414580
date created
2008-05-16 13:56:00
date last changed
2016-12-19 15:44:02
@article{414580,
  abstract     = {As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ({\textacutedbl}NBS-LRR genes{\textacutedbl}) play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of similar to 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.},
  author       = {Kohler, Annegret and Rinaldi, C{\'e}cile and Duplessis, S{\'e}bastien and Baucher, Marie and Geelen, Danny and Duchaussoy, Fr{\'e}d{\'e}ric and Meyers, Blake C and Boerjan, Wout and Martin, Francis},
  issn         = {0167-4412},
  journal      = {PLANT MOLECULAR BIOLOGY},
  keyword      = {DEFENSE,RESPONSES,DELTOIDES,SEQUENCE,HYBRID POPLAR,RUST RESISTANCE,ARABIDOPSIS-THALIANA,LRR PROTEINS,DISEASE-RESISTANCE,MELAMPSORA-LARICI-POPULINA,resistance,Populus,NBS-LRR},
  language     = {eng},
  number       = {6},
  pages        = {619--636},
  title        = {Genome-wide identification of NBS resistance genes in Populus trichocarpa},
  url          = {http://dx.doi.org/10.1007/s11103-008-9293-9},
  volume       = {66},
  year         = {2008},
}

Chicago
Kohler, Annegret, Cécile Rinaldi, Sébastien Duplessis, Marie Baucher, Danny Geelen, Frédéric Duchaussoy, Blake C Meyers, Wout Boerjan, and Francis Martin. 2008. “Genome-wide Identification of NBS Resistance Genes in Populus Trichocarpa.” Plant Molecular Biology 66 (6): 619–636.
APA
Kohler, A., Rinaldi, C., Duplessis, S., Baucher, M., Geelen, D., Duchaussoy, F., Meyers, B. C., et al. (2008). Genome-wide identification of NBS resistance genes in Populus trichocarpa. PLANT MOLECULAR BIOLOGY, 66(6), 619–636.
Vancouver
1.
Kohler A, Rinaldi C, Duplessis S, Baucher M, Geelen D, Duchaussoy F, et al. Genome-wide identification of NBS resistance genes in Populus trichocarpa. PLANT MOLECULAR BIOLOGY. 2008;66(6):619–36.
MLA
Kohler, Annegret, Cécile Rinaldi, Sébastien Duplessis, et al. “Genome-wide Identification of NBS Resistance Genes in Populus Trichocarpa.” PLANT MOLECULAR BIOLOGY 66.6 (2008): 619–636. Print.