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Genome-wide identification of NBS resistance genes in Populus trichocarpa

(2008) PLANT MOLECULAR BIOLOGY. 66(6). p.619-636
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Organization
Abstract
As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ("NBS-LRR genes") play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of similar to 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.
Keywords
DEFENSE, RESPONSES, DELTOIDES, SEQUENCE, HYBRID POPLAR, RUST RESISTANCE, ARABIDOPSIS-THALIANA, LRR PROTEINS, DISEASE-RESISTANCE, MELAMPSORA-LARICI-POPULINA, resistance, Populus, NBS-LRR

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Citation

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Chicago
Kohler, Annegret, Cécile Rinaldi, Sébastien Duplessis, Marie Baucher, Danny Geelen, Frédéric Duchaussoy, Blake C Meyers, Wout Boerjan, and Francis Martin. 2008. “Genome-wide Identification of NBS Resistance Genes in Populus Trichocarpa.” Plant Molecular Biology 66 (6): 619–636.
APA
Kohler, A., Rinaldi, C., Duplessis, S., Baucher, M., Geelen, D., Duchaussoy, F., Meyers, B. C., et al. (2008). Genome-wide identification of NBS resistance genes in Populus trichocarpa. PLANT MOLECULAR BIOLOGY, 66(6), 619–636.
Vancouver
1.
Kohler A, Rinaldi C, Duplessis S, Baucher M, Geelen D, Duchaussoy F, et al. Genome-wide identification of NBS resistance genes in Populus trichocarpa. PLANT MOLECULAR BIOLOGY. 2008;66(6):619–36.
MLA
Kohler, Annegret, Cécile Rinaldi, Sébastien Duplessis, et al. “Genome-wide Identification of NBS Resistance Genes in Populus Trichocarpa.” PLANT MOLECULAR BIOLOGY 66.6 (2008): 619–636. Print.
@article{414580,
  abstract     = {As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ({\textacutedbl}NBS-LRR genes{\textacutedbl}) play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of similar to 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.},
  author       = {Kohler, Annegret and Rinaldi, C{\'e}cile and Duplessis, S{\'e}bastien and Baucher, Marie and Geelen, Danny and Duchaussoy, Fr{\'e}d{\'e}ric and Meyers, Blake C and Boerjan, Wout and Martin, Francis},
  issn         = {0167-4412},
  journal      = {PLANT MOLECULAR BIOLOGY},
  keyword      = {DEFENSE,RESPONSES,DELTOIDES,SEQUENCE,HYBRID POPLAR,RUST RESISTANCE,ARABIDOPSIS-THALIANA,LRR PROTEINS,DISEASE-RESISTANCE,MELAMPSORA-LARICI-POPULINA,resistance,Populus,NBS-LRR},
  language     = {eng},
  number       = {6},
  pages        = {619--636},
  title        = {Genome-wide identification of NBS resistance genes in Populus trichocarpa},
  url          = {http://dx.doi.org/10.1007/s11103-008-9293-9},
  volume       = {66},
  year         = {2008},
}

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