Advanced search
1 file | 69.95 KB

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

Steven Maere (UGent) , Karel Heymans and Martin Kuiper (UGent)
(2005) BIOINFORMATICS. 21(16). p.3448-3449
Author
Organization
Abstract
The Biological Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine which Gene Ontology (GO) terms are significantly overrepresented in a set of genes. BiNGO can be used either on a list of genes, pasted as text, or interactively on subgraphs of biological networks visualized in Cytoscape. BiNGO maps the predominant functional themes of the tested gene set on the GO hierarchy, and takes advantage of Cytoscape's versatile visualization environment to produce an intuitive and customizable visual representation of the results.
Keywords
SOFTWARE, ANNOTATION, TERMS, SETS

Downloads

  • (...).pdf
    • full text
    • |
    • UGent only
    • |
    • PDF
    • |
    • 69.95 KB

Citation

Please use this url to cite or link to this publication:

Chicago
Maere, Steven, Karel Heymans, and Martin Kuiper. 2005. “BiNGO: a Cytoscape Plugin to Assess Overrepresentation of Gene Ontology Categories in Biological Networks.” Bioinformatics 21 (16): 3448–3449.
APA
Maere, S., Heymans, K., & Kuiper, M. (2005). BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. BIOINFORMATICS, 21(16), 3448–3449.
Vancouver
1.
Maere S, Heymans K, Kuiper M. BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. BIOINFORMATICS. 2005;21(16):3448–9.
MLA
Maere, Steven, Karel Heymans, and Martin Kuiper. “BiNGO: a Cytoscape Plugin to Assess Overrepresentation of Gene Ontology Categories in Biological Networks.” BIOINFORMATICS 21.16 (2005): 3448–3449. Print.
@article{336521,
  abstract     = {The Biological Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine which Gene Ontology (GO) terms are significantly overrepresented in a set of genes. BiNGO can be used either on a list of genes, pasted as text, or interactively on subgraphs of biological networks visualized in Cytoscape. BiNGO maps the predominant functional themes of the tested gene set on the GO hierarchy, and takes advantage of Cytoscape's versatile visualization environment to produce an intuitive and customizable visual representation of the results.},
  author       = {Maere, Steven and Heymans, Karel and Kuiper, Martin},
  issn         = {1367-4803},
  journal      = {BIOINFORMATICS},
  language     = {eng},
  number       = {16},
  pages        = {3448--3449},
  title        = {BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks},
  url          = {http://dx.doi.org/10.1093/bioinformatics/bti551},
  volume       = {21},
  year         = {2005},
}

Altmetric
View in Altmetric
Web of Science
Times cited: