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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) NATURE BIOTECHNOLOGY. 29(5). p.415-420
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Abstract
Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences-the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.
Keywords
COMMUNITY, PLANKTON, PICOPLANKTON, MICROORGANISMS, BACTERIOPLANKTON, RIBOSOMAL-RNA SEQUENCES, DIVERSITY, REGIONS, PROJECT

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Citation

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MLA
Yilmaz, Pelin, Renzo Kottmann, Dawn Field, et al. “Minimum Information About a Marker Gene Sequence (MIMARKS) and Minimum Information About Any (x) Sequence (MIxS) Specifications.” NATURE BIOTECHNOLOGY 29.5 (2011): 415–420. Print.
APA
Yilmaz, P., Kottmann, R., Field, D., Knight, R., Cole, J. R., Amaral-Zettler, L., Gilbert, J. A., et al. (2011). Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. NATURE BIOTECHNOLOGY, 29(5), 415–420.
Chicago author-date
Yilmaz, Pelin, Renzo Kottmann, Dawn Field, Rob Knight, James R Cole, Linda Amaral-Zettler, Jack A Gilbert, et al. 2011. “Minimum Information About a Marker Gene Sequence (MIMARKS) and Minimum Information About Any (x) Sequence (MIxS) Specifications.” Nature Biotechnology 29 (5): 415–420.
Chicago author-date (all authors)
Yilmaz, Pelin, Renzo Kottmann, Dawn Field, Rob Knight, James R Cole, Linda Amaral-Zettler, Jack A Gilbert, Ilene Karsch-Mizrachi, Anjanette Johnston, Guy Cochrane, Robert Vaughan, Christopher Hunter, Joonhong Park, Norman Morrison, Philippe Rocca-Serra, Peter Sterk, Manimozhiyan Arumugam, Mark Bailey, Laura Baumgartner, Bruce W Birren, Martin J Blaser, Vivien Bonazzi, Tim Booth, Peer Bork, Frederic D Bushman, Pier Luigi Buttigieg, Patrick SG Chain, Emily Charlson, Elizabeth K Costello, Heather Huot-Creasy, Peter Dawyndt, Todd DeSantis, Noah Fierer, Jed A Fuhrman, Rachel E Gallery, Dirk Gevers, Richard A Gibbs, Inigo San Gil, Antonio Gonzalez, Jeffrey I Gordon, Robert Guralnick, Wolfgang Hankeln, Sarah Highlander, Philip Hugenholtz, Janet Jansson, Andrew L Kau, Scott T Kelley, Jerry Kennedy, Dan Knights, Omry Koren, Justin Kuczynski, Nikos Kyrpides, Robert Larsen, Christian L Lauber, Teresa Legg, Ruth E Ley, Catherine A Lozupone, Wolfgang Ludwig, Donna Lyons, Eamonn Maguire, Barbara A Methé, Folker Meyer, Brian Muegge, Sara Nakielny, Karen E Nelson, Diana Nemergut, Josh D Neufeld, Lindsay K Newbold, Anna E Oliver, Norman R Pace, Giriprakash Palanisamy, Jörg Peplies, Joseph Petrosino, Lita Proctor, Elmar Pruesse, Christian Quast, Jeroen Raes, Sujeevan Ratnasingham, Jacques Ravel, David A Relman, Susanna Assunta-Sansone, Patrick D Schloss, Lynn Schriml, Rohini Sinha, Michelle I Smith, Erica Sodergren, Aymé Spor, Jesse Stombaugh, James M Tiedje, Doyle V Ward, George M Weinstock, Doug Wendel, Owen White, Andrew Whiteley, Andreas Wilke, Jennifer R Wortman, Tanya Yatsunenko, and Frank Oliver Glöckner. 2011. “Minimum Information About a Marker Gene Sequence (MIMARKS) and Minimum Information About Any (x) Sequence (MIxS) Specifications.” Nature Biotechnology 29 (5): 415–420.
Vancouver
1.
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. NATURE BIOTECHNOLOGY. 2011;29(5):415–20.
IEEE
[1]
P. Yilmaz et al., “Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications,” NATURE BIOTECHNOLOGY, vol. 29, no. 5, pp. 415–420, 2011.
@article{2960141,
  abstract     = {Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences-the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.},
  author       = {Yilmaz, Pelin and Kottmann, Renzo and Field, Dawn and Knight, Rob and Cole, James R and Amaral-Zettler, Linda and Gilbert, Jack A and Karsch-Mizrachi, Ilene and Johnston, Anjanette and Cochrane, Guy and Vaughan, Robert and Hunter, Christopher and Park, Joonhong and Morrison, Norman and Rocca-Serra, Philippe and Sterk, Peter and Arumugam, Manimozhiyan and Bailey, Mark and Baumgartner, Laura and Birren, Bruce W and Blaser, Martin J and Bonazzi, Vivien and Booth, Tim and Bork, Peer and Bushman, Frederic D and Buttigieg, Pier Luigi and Chain, Patrick SG and Charlson, Emily and Costello, Elizabeth K and Huot-Creasy, Heather and Dawyndt, Peter and DeSantis, Todd and Fierer, Noah and Fuhrman, Jed A and Gallery, Rachel E and Gevers, Dirk and Gibbs, Richard A and Gil, Inigo San and Gonzalez, Antonio and Gordon, Jeffrey I and Guralnick, Robert and Hankeln, Wolfgang and Highlander, Sarah and Hugenholtz, Philip and Jansson, Janet and Kau, Andrew L and Kelley, Scott T and Kennedy, Jerry and Knights, Dan and Koren, Omry and Kuczynski, Justin and Kyrpides, Nikos and Larsen, Robert and Lauber, Christian L and Legg, Teresa and Ley, Ruth E and Lozupone, Catherine A and Ludwig, Wolfgang and Lyons, Donna and Maguire, Eamonn and Methé, Barbara A and Meyer, Folker and Muegge, Brian and Nakielny, Sara and Nelson, Karen E and Nemergut, Diana and Neufeld, Josh D and Newbold, Lindsay K and Oliver, Anna E and Pace, Norman R and Palanisamy, Giriprakash and Peplies, Jörg and Petrosino, Joseph and Proctor, Lita and Pruesse, Elmar and Quast, Christian and Raes, Jeroen and Ratnasingham, Sujeevan and Ravel, Jacques and Relman, David A and Assunta-Sansone, Susanna and Schloss, Patrick D and Schriml, Lynn and Sinha, Rohini and Smith, Michelle I and Sodergren, Erica and Spor, Aymé and Stombaugh, Jesse and Tiedje, James M and Ward, Doyle V and Weinstock, George M and Wendel, Doug and White, Owen and Whiteley, Andrew and Wilke, Andreas and Wortman, Jennifer R and Yatsunenko, Tanya and Glöckner, Frank Oliver},
  issn         = {1087-0156},
  journal      = {NATURE BIOTECHNOLOGY},
  keywords     = {COMMUNITY,PLANKTON,PICOPLANKTON,MICROORGANISMS,BACTERIOPLANKTON,RIBOSOMAL-RNA SEQUENCES,DIVERSITY,REGIONS,PROJECT},
  language     = {eng},
  number       = {5},
  pages        = {415--420},
  title        = {Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications},
  url          = {http://dx.doi.org/10.1038/nbt.1823},
  volume       = {29},
  year         = {2011},
}

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