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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James R Cole, Linda Amaral-Zettler, Jack A Gilbert, Ilene Karsch-Mizrachi, Anjanette Johnston and Guy Cochrane, et al. (2011) NATURE BIOTECHNOLOGY. 29(5). p.415-420
abstract
Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences-the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
COMMUNITY, PLANKTON, PICOPLANKTON, MICROORGANISMS, BACTERIOPLANKTON, RIBOSOMAL-RNA SEQUENCES, DIVERSITY, REGIONS, PROJECT
journal title
NATURE BIOTECHNOLOGY
Nat. Biotechnol.
volume
29
issue
5
pages
415 - 420
Web of Science type
Article
Web of Science id
000290301700021
JCR category
BIOTECHNOLOGY & APPLIED MICROBIOLOGY
JCR impact factor
23.268 (2011)
JCR rank
2/157 (2011)
JCR quartile
1 (2011)
ISSN
1087-0156
DOI
10.1038/nbt.1823
language
English
UGent publication?
yes
classification
A1
copyright statement
I have transferred the copyright for this publication to the publisher
id
2960141
handle
http://hdl.handle.net/1854/LU-2960141
date created
2012-07-10 11:58:09
date last changed
2012-07-12 16:37:43
@article{2960141,
  abstract     = {Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences-the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.},
  author       = {Yilmaz, Pelin and Kottmann, Renzo and Field, Dawn and Knight, Rob and Cole, James R and Amaral-Zettler, Linda and Gilbert, Jack A and Karsch-Mizrachi, Ilene and Johnston, Anjanette and Cochrane, Guy and Vaughan, Robert and Hunter, Christopher and Park, Joonhong and Morrison, Norman and Rocca-Serra, Philippe and Sterk, Peter and Arumugam, Manimozhiyan and Bailey, Mark and Baumgartner, Laura and Birren, Bruce W and Blaser, Martin J and Bonazzi, Vivien and Booth, Tim and Bork, Peer and Bushman, Frederic D and Buttigieg, Pier Luigi and Chain, Patrick SG and Charlson, Emily and Costello, Elizabeth K and Huot-Creasy, Heather and Dawyndt, Peter and DeSantis, Todd and Fierer, Noah and Fuhrman, Jed A and Gallery, Rachel E and Gevers, Dirk and Gibbs, Richard A and Gil, Inigo San and Gonzalez, Antonio and Gordon, Jeffrey I and Guralnick, Robert and Hankeln, Wolfgang and Highlander, Sarah and Hugenholtz, Philip and Jansson, Janet and Kau, Andrew L and Kelley, Scott T and Kennedy, Jerry and Knights, Dan and Koren, Omry and Kuczynski, Justin and Kyrpides, Nikos and Larsen, Robert and Lauber, Christian L and Legg, Teresa and Ley, Ruth E and Lozupone, Catherine A and Ludwig, Wolfgang and Lyons, Donna and Maguire, Eamonn and Meth{\'e}, Barbara A and Meyer, Folker and Muegge, Brian and Nakielny, Sara and Nelson, Karen E and Nemergut, Diana and Neufeld, Josh D and Newbold, Lindsay K and Oliver, Anna E and Pace, Norman R and Palanisamy, Giriprakash and Peplies, J{\"o}rg and Petrosino, Joseph and Proctor, Lita and Pruesse, Elmar and Quast, Christian and Raes, Jeroen and Ratnasingham, Sujeevan and Ravel, Jacques and Relman, David A and Assunta-Sansone, Susanna and Schloss, Patrick D and Schriml, Lynn and Sinha, Rohini and Smith, Michelle I and Sodergren, Erica and Spor, Aym{\'e} and Stombaugh, Jesse and Tiedje, James M and Ward, Doyle V and Weinstock, George M and Wendel, Doug and White, Owen and Whiteley, Andrew and Wilke, Andreas and Wortman, Jennifer R and Yatsunenko, Tanya and Gl{\"o}ckner, Frank Oliver},
  issn         = {1087-0156},
  journal      = {NATURE BIOTECHNOLOGY},
  keyword      = {COMMUNITY,PLANKTON,PICOPLANKTON,MICROORGANISMS,BACTERIOPLANKTON,RIBOSOMAL-RNA SEQUENCES,DIVERSITY,REGIONS,PROJECT},
  language     = {eng},
  number       = {5},
  pages        = {415--420},
  title        = {Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications},
  url          = {http://dx.doi.org/10.1038/nbt.1823},
  volume       = {29},
  year         = {2011},
}

Chicago
Yilmaz, Pelin, Renzo Kottmann, Dawn Field, Rob Knight, James R Cole, Linda Amaral-Zettler, Jack A Gilbert, et al. 2011. “Minimum Information About a Marker Gene Sequence (MIMARKS) and Minimum Information About Any (x) Sequence (MIxS) Specifications.” Nature Biotechnology 29 (5): 415–420.
APA
Yilmaz, P., Kottmann, R., Field, D., Knight, R., Cole, J. R., Amaral-Zettler, L., Gilbert, J. A., et al. (2011). Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. NATURE BIOTECHNOLOGY, 29(5), 415–420.
Vancouver
1.
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. NATURE BIOTECHNOLOGY. 2011;29(5):415–20.
MLA
Yilmaz, Pelin, Renzo Kottmann, Dawn Field, et al. “Minimum Information About a Marker Gene Sequence (MIMARKS) and Minimum Information About Any (x) Sequence (MIxS) Specifications.” NATURE BIOTECHNOLOGY 29.5 (2011): 415–420. Print.