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Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins

Bjorn Vergauwen (UGent) , Ruben Van der Meeren (UGent) , Ann Dansercoer (UGent) and Savvas Savvides (UGent)
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Abstract
Background: The Gram-negative bacterium Haemophilus influenzae is a glutathione auxotroph and acquires the redox-active tripeptide by import. The dedicated glutathione transporter belongs to the ATP-binding cassette (ABC)-transporter superfamily and displays more than 60% overall sequence identity with the well-studied dipeptide (Dpp) permease of Escherichia coli. The solute binding protein (SBP) that mediates glutathione transport in H. influenzae is a lipoprotein termed GbpA and is 54% identical to E. coli DppA, a well-studied member of family 5 SBP's. The discovery linking GbpA to glutathione import came rather unexpectedly as this import-priming SBP was previously annotated as a heme-binding protein (HbpA), and was thought to mediate heme acquisition. Nonetheless, although many SBP's have been implicated in more than one function, a prominent physiological role for GbpA and its partner permease in heme acquisition appears to be very unlikely. Here, we sought to characterize five representative GbpA homologs in an effort to delineate the novel GbpA-family of glutathione-specific family 5 SBPs and to further clarify their functional role in terms of ligand preferences. Results: Lipoprotein and non-lipoprotein GbpA homologs were expressed in soluble form and substrate specificity was evaluated via a number of ligand binding assays. A physiologically insignificant affinity for hemin was observed for all five GbpA homologous test proteins. Three out of five test proteins were found to bind glutathione and some of its physiologically relevant derivatives with low-or submicromolar affinity. None of the tested SBP family 5 allocrites interacted with the remaining two GbpA test proteins. Structure-based sequence alignments and phylogenetic analysis show that the two binding-inert GbpA homologs clearly form a separate phylogenetic cluster. To elucidate a structure-function rationale for this phylogenetic differentiation, we determined the crystal structure of one of the GbpA family outliers from H. parasuis. Comparisons thereof with the previously determined structure of GbpA in complex with oxidized glutathione reveals the structural basis for the lack of allocrite binding capacity, thereby explaining the outlier behavior. Conclusions: Taken together, our studies provide for the first time a collective functional look on a novel, Pasteurellaceae-specific, SBP subfamily of glutathione binding proteins, which we now term GbpA proteins. Our studies strongly implicate GbpA family SBPs in the priming step of ABC-transporter-mediated translocation of useful forms of glutathione across the inner membrane, and rule out a general role for GbpA proteins in heme acquisition.
Keywords
MAXIMUM-LIKELIHOOD, CRYSTAL-STRUCTURE, CAMPYLOBACTER-JEJUNI, HAEMOPHILUS-INFLUENZAE, ABC transporter, SBP, glutathione, GbpA, HbpA, solute-binding protein, DppA, ABC TRANSPORTERS, HEME UTILIZATION, HBPA, MODEL

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MLA
Vergauwen, Bjorn, Ruben Van der Meeren, Ann Dansercoer, et al. “Delineation of the Pasteurellaceae-specific GbpA-family of Glutathione-binding Proteins.” BMC BIOCHEMISTRY 12 (2011): n. pag. Print.
APA
Vergauwen, B., Van der Meeren, R., Dansercoer, A., & Savvides, S. (2011). Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins. BMC BIOCHEMISTRY, 12.
Chicago author-date
Vergauwen, Bjorn, Ruben Van der Meeren, Ann Dansercoer, and Savvas Savvides. 2011. “Delineation of the Pasteurellaceae-specific GbpA-family of Glutathione-binding Proteins.” Bmc Biochemistry 12.
Chicago author-date (all authors)
Vergauwen, Bjorn, Ruben Van der Meeren, Ann Dansercoer, and Savvas Savvides. 2011. “Delineation of the Pasteurellaceae-specific GbpA-family of Glutathione-binding Proteins.” Bmc Biochemistry 12.
Vancouver
1.
Vergauwen B, Van der Meeren R, Dansercoer A, Savvides S. Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins. BMC BIOCHEMISTRY. 2011;12.
IEEE
[1]
B. Vergauwen, R. Van der Meeren, A. Dansercoer, and S. Savvides, “Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins,” BMC BIOCHEMISTRY, vol. 12, 2011.
@article{2103104,
  abstract     = {Background: The Gram-negative bacterium Haemophilus influenzae is a glutathione auxotroph and acquires the redox-active tripeptide by import. The dedicated glutathione transporter belongs to the ATP-binding cassette (ABC)-transporter superfamily and displays more than 60% overall sequence identity with the well-studied dipeptide (Dpp) permease of Escherichia coli. The solute binding protein (SBP) that mediates glutathione transport in H. influenzae is a lipoprotein termed GbpA and is 54% identical to E. coli DppA, a well-studied member of family 5 SBP's. The discovery linking GbpA to glutathione import came rather unexpectedly as this import-priming SBP was previously annotated as a heme-binding protein (HbpA), and was thought to mediate heme acquisition. Nonetheless, although many SBP's have been implicated in more than one function, a prominent physiological role for GbpA and its partner permease in heme acquisition appears to be very unlikely. Here, we sought to characterize five representative GbpA homologs in an effort to delineate the novel GbpA-family of glutathione-specific family 5 SBPs and to further clarify their functional role in terms of ligand preferences. 
Results: Lipoprotein and non-lipoprotein GbpA homologs were expressed in soluble form and substrate specificity was evaluated via a number of ligand binding assays. A physiologically insignificant affinity for hemin was observed for all five GbpA homologous test proteins. Three out of five test proteins were found to bind glutathione and some of its physiologically relevant derivatives with low-or submicromolar affinity. None of the tested SBP family 5 allocrites interacted with the remaining two GbpA test proteins. Structure-based sequence alignments and phylogenetic analysis show that the two binding-inert GbpA homologs clearly form a separate phylogenetic cluster. To elucidate a structure-function rationale for this phylogenetic differentiation, we determined the crystal structure of one of the GbpA family outliers from H. parasuis. Comparisons thereof with the previously determined structure of GbpA in complex with oxidized glutathione reveals the structural basis for the lack of allocrite binding capacity, thereby explaining the outlier behavior. 
Conclusions: Taken together, our studies provide for the first time a collective functional look on a novel, Pasteurellaceae-specific, SBP subfamily of glutathione binding proteins, which we now term GbpA proteins. Our studies strongly implicate GbpA family SBPs in the priming step of ABC-transporter-mediated translocation of useful forms of glutathione across the inner membrane, and rule out a general role for GbpA proteins in heme acquisition.},
  articleno    = {59},
  author       = {Vergauwen, Bjorn and Van der Meeren, Ruben and Dansercoer, Ann and Savvides, Savvas},
  issn         = {1471-2091},
  journal      = {BMC BIOCHEMISTRY},
  keywords     = {MAXIMUM-LIKELIHOOD,CRYSTAL-STRUCTURE,CAMPYLOBACTER-JEJUNI,HAEMOPHILUS-INFLUENZAE,ABC transporter,SBP,glutathione,GbpA,HbpA,solute-binding protein,DppA,ABC TRANSPORTERS,HEME UTILIZATION,HBPA,MODEL},
  language     = {eng},
  pages        = {10},
  title        = {Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins},
  url          = {http://dx.doi.org/10.1186/1471-2091-12-59},
  volume       = {12},
  year         = {2011},
}

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