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OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine

(2008) PROTEOMICS. 8(12). p.2376-1378
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Abstract
We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.
Keywords
bioinformatics, protein identification, MASS-SPECTROMETRY DATA, TANDEM, IDENTIFICATION, PROTEINS, STRATEGY

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Citation

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Chicago
Tharakan, Ravi, Lennart Martens, Jennifer E Van Eyk, and David R Graham. 2008. “OMSSAGUI: An Open-source User Interface Component to Configure and Run the OMSSA Search Engine.” Proteomics 8 (12): 2376–1378.
APA
Tharakan, R., Martens, L., Van Eyk, J. E., & Graham, D. R. (2008). OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine. PROTEOMICS, 8(12), 2376–1378.
Vancouver
1.
Tharakan R, Martens L, Van Eyk JE, Graham DR. OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine. PROTEOMICS. 2008;8(12):2376–1378.
MLA
Tharakan, Ravi, Lennart Martens, Jennifer E Van Eyk, et al. “OMSSAGUI: An Open-source User Interface Component to Configure and Run the OMSSA Search Engine.” PROTEOMICS 8.12 (2008): 2376–1378. Print.
@article{2031908,
  abstract     = {We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.},
  author       = {Tharakan, Ravi and Martens, Lennart and Van Eyk, Jennifer E and Graham, David R},
  issn         = {1615-9853},
  journal      = {PROTEOMICS},
  keyword      = {bioinformatics,protein identification,MASS-SPECTROMETRY DATA,TANDEM,IDENTIFICATION,PROTEINS,STRATEGY},
  language     = {eng},
  number       = {12},
  pages        = {2376--1378},
  title        = {OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine},
  url          = {http://dx.doi.org/10.1002/pmic.200701126},
  volume       = {8},
  year         = {2008},
}

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