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OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine

Ravi Tharakan, Lennart Martens UGent, Jennifer E Van Eyk and David R Graham (2008) PROTEOMICS. 8(12). p.2376-1378
abstract
We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
bioinformatics, protein identification, MASS-SPECTROMETRY DATA, TANDEM, IDENTIFICATION, PROTEINS, STRATEGY
journal title
PROTEOMICS
Proteomics
volume
8
issue
12
pages
2376 - 1378
Web of Science type
Article
Web of Science id
000257468200003
JCR category
BIOCHEMICAL RESEARCH METHODS
JCR impact factor
4.586 (2008)
JCR rank
10/65 (2008)
JCR quartile
1 (2008)
ISSN
1615-9853
DOI
10.1002/pmic.200701126
language
English
UGent publication?
no
classification
A1
copyright statement
I have transferred the copyright for this publication to the publisher
id
2031908
handle
http://hdl.handle.net/1854/LU-2031908
date created
2012-02-15 00:33:11
date last changed
2016-12-19 15:42:03
@article{2031908,
  abstract     = {We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.},
  author       = {Tharakan, Ravi and Martens, Lennart and Van Eyk, Jennifer E and Graham, David R},
  issn         = {1615-9853},
  journal      = {PROTEOMICS},
  keyword      = {bioinformatics,protein identification,MASS-SPECTROMETRY DATA,TANDEM,IDENTIFICATION,PROTEINS,STRATEGY},
  language     = {eng},
  number       = {12},
  pages        = {2376--1378},
  title        = {OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine},
  url          = {http://dx.doi.org/10.1002/pmic.200701126},
  volume       = {8},
  year         = {2008},
}

Chicago
Tharakan, Ravi, Lennart Martens, Jennifer E Van Eyk, and David R Graham. 2008. “OMSSAGUI: An Open-source User Interface Component to Configure and Run the OMSSA Search Engine.” Proteomics 8 (12): 2376–1378.
APA
Tharakan, R., Martens, L., Van Eyk, J. E., & Graham, D. R. (2008). OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine. PROTEOMICS, 8(12), 2376–1378.
Vancouver
1.
Tharakan R, Martens L, Van Eyk JE, Graham DR. OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine. PROTEOMICS. 2008;8(12):2376–1378.
MLA
Tharakan, Ravi, Lennart Martens, Jennifer E Van Eyk, et al. “OMSSAGUI: An Open-source User Interface Component to Configure and Run the OMSSA Search Engine.” PROTEOMICS 8.12 (2008): 2376–1378. Print.