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OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine

Ravi Tharakan, Lennart Martens (UGent) , Jennifer E Van Eyk and David R Graham
(2008) PROTEOMICS. 8(12). p.2376-1378
Author
Organization
Abstract
We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.
Keywords
bioinformatics, protein identification, MASS-SPECTROMETRY DATA, TANDEM, IDENTIFICATION, PROTEINS, STRATEGY

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Citation

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MLA
Tharakan, Ravi, et al. “OMSSAGUI: An Open-Source User Interface Component to Configure and Run the OMSSA Search Engine.” PROTEOMICS, vol. 8, no. 12, 2008, pp. 2376–1378, doi:10.1002/pmic.200701126.
APA
Tharakan, R., Martens, L., Van Eyk, J. E., & Graham, D. R. (2008). OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine. PROTEOMICS, 8(12), 2376–1378. https://doi.org/10.1002/pmic.200701126
Chicago author-date
Tharakan, Ravi, Lennart Martens, Jennifer E Van Eyk, and David R Graham. 2008. “OMSSAGUI: An Open-Source User Interface Component to Configure and Run the OMSSA Search Engine.” PROTEOMICS 8 (12): 2376–1378. https://doi.org/10.1002/pmic.200701126.
Chicago author-date (all authors)
Tharakan, Ravi, Lennart Martens, Jennifer E Van Eyk, and David R Graham. 2008. “OMSSAGUI: An Open-Source User Interface Component to Configure and Run the OMSSA Search Engine.” PROTEOMICS 8 (12): 2376–1378. doi:10.1002/pmic.200701126.
Vancouver
1.
Tharakan R, Martens L, Van Eyk JE, Graham DR. OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine. PROTEOMICS. 2008;8(12):2376–1378.
IEEE
[1]
R. Tharakan, L. Martens, J. E. Van Eyk, and D. R. Graham, “OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine,” PROTEOMICS, vol. 8, no. 12, pp. 2376–1378, 2008.
@article{2031908,
  abstract     = {{We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.}},
  author       = {{Tharakan, Ravi and Martens, Lennart and Van Eyk, Jennifer E and Graham, David R}},
  issn         = {{1615-9853}},
  journal      = {{PROTEOMICS}},
  keywords     = {{bioinformatics,protein identification,MASS-SPECTROMETRY DATA,TANDEM,IDENTIFICATION,PROTEINS,STRATEGY}},
  language     = {{eng}},
  number       = {{12}},
  pages        = {{2376--1378}},
  title        = {{OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine}},
  url          = {{http://doi.org/10.1002/pmic.200701126}},
  volume       = {{8}},
  year         = {{2008}},
}
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