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Combining quantitative proteomics data processing workflows for greater sensitivity

Niklaas Colaert (UGent) , Christophe Van Huele (UGent) , Sven Degroeve (UGent) , An Staes (UGent) , Joël Vandekerckhove (UGent) , Kris Gevaert (UGent) and Lennart Martens (UGent)
(2011) NATURE METHODS. 8(6). p.481-U66
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Abstract
We here describe a normalization method to combine quantitative proteomics data. By merging the output of two popular quantification software packages, we obtained a 20% increase (on average) in the number of quantified human proteins without suffering from a loss of quality. Our integrative workflow is freely available through our user-friendly, open-source Rover software (http://compomics-rover.googlecode.com/).
Keywords
RATES, TOOL, IMPROVING SENSITIVITY, PROTEIN QUANTIFICATION, IMPROVING SENSITIVITY, PROTEIN QUANTIFICATION, PEPTIDE IDENTIFICATION, RATES, MULTIPLE SEARCH ENGINES, MASS-SPECTROMETRY, TOOL

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MLA
Colaert, Niklaas, et al. “Combining Quantitative Proteomics Data Processing Workflows for Greater Sensitivity.” NATURE METHODS, vol. 8, no. 6, 2011, pp. 481-U66, doi:10.1038/NMETH.1604.
APA
Colaert, N., Van Huele, C., Degroeve, S., Staes, A., Vandekerckhove, J., Gevaert, K., & Martens, L. (2011). Combining quantitative proteomics data processing workflows for greater sensitivity. NATURE METHODS, 8(6), 481-U66. https://doi.org/10.1038/NMETH.1604
Chicago author-date
Colaert, Niklaas, Christophe Van Huele, Sven Degroeve, An Staes, Joël Vandekerckhove, Kris Gevaert, and Lennart Martens. 2011. “Combining Quantitative Proteomics Data Processing Workflows for Greater Sensitivity.” NATURE METHODS 8 (6): 481-U66. https://doi.org/10.1038/NMETH.1604.
Chicago author-date (all authors)
Colaert, Niklaas, Christophe Van Huele, Sven Degroeve, An Staes, Joël Vandekerckhove, Kris Gevaert, and Lennart Martens. 2011. “Combining Quantitative Proteomics Data Processing Workflows for Greater Sensitivity.” NATURE METHODS 8 (6): 481-U66. doi:10.1038/NMETH.1604.
Vancouver
1.
Colaert N, Van Huele C, Degroeve S, Staes A, Vandekerckhove J, Gevaert K, et al. Combining quantitative proteomics data processing workflows for greater sensitivity. NATURE METHODS. 2011;8(6):481-U66.
IEEE
[1]
N. Colaert et al., “Combining quantitative proteomics data processing workflows for greater sensitivity,” NATURE METHODS, vol. 8, no. 6, pp. 481-U66, 2011.
@article{1887669,
  abstract     = {{We here describe a normalization method to combine quantitative proteomics data. By merging the output of two popular quantification software packages, we obtained a 20% increase (on average) in the number of quantified human proteins without suffering from a loss of quality. Our integrative workflow is freely available through our user-friendly, open-source Rover software (http://compomics-rover.googlecode.com/).}},
  author       = {{Colaert, Niklaas and Van Huele, Christophe and Degroeve, Sven and Staes, An and Vandekerckhove, Joël and Gevaert, Kris and Martens, Lennart}},
  issn         = {{1548-7091}},
  journal      = {{NATURE METHODS}},
  keywords     = {{RATES,TOOL,IMPROVING SENSITIVITY,PROTEIN QUANTIFICATION,IMPROVING SENSITIVITY,PROTEIN QUANTIFICATION,PEPTIDE IDENTIFICATION,RATES,MULTIPLE SEARCH ENGINES,MASS-SPECTROMETRY,TOOL}},
  language     = {{eng}},
  number       = {{6}},
  pages        = {{481--U66}},
  title        = {{Combining quantitative proteomics data processing workflows for greater sensitivity}},
  url          = {{http://doi.org/10.1038/NMETH.1604}},
  volume       = {{8}},
  year         = {{2011}},
}
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