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Wanda : a database of duplicated fish genes

Yves Van de Peer UGent, John S Taylor, Jayabalan Joseph and Axel Meyer (2002) NUCLEIC ACIDS RESEARCH. 30(1). p.109-112
abstract
Comparative genomics has shown that ray-finned fish (Actinopterygii) contain more copies of many genes than other vertebrates. A large number of these additional genes appear to have been produced during a genome duplication event that occurred early during the evolution of Actinopterygii (i.e. before the teleost radiation). In addition to this ancient genome duplication event, many lineages within Actinopterygii have experienced more recent genome duplications. Here we introduce a curated database named Wanda that lists groups of orthologous genes with one copy from man, mouse and chicken, one or two from tetraploid Xenopus and two or more ancient copies (i.e. paralogs) from ray-finned fish. The database also contains the sequence alignments and phylogenetic trees that were necessary for determining the correct orthologous and paralogous relationships among genes. Where available, map positions and functional data are also reported. The Wanda database should be of particular use to evolutionary and developmental biologists who are interested in the evolutionary and functional divergence of genes after duplication. Wanda is available at http://www.evolutionsbiologie.uni-konstanz.de/Wanda/.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
HOX CLUSTERS, COMPARATIVE GENOMICS, EVOLUTION, ZEBRAFISH, VERTEBRATES, PRESERVATION, EXPRESSION, REDUNDANCY, MAP
journal title
NUCLEIC ACIDS RESEARCH
Nucleic Acids Res.
volume
30
issue
1
pages
109 - 112
Web of Science type
Article
Web of Science id
000173077100028
JCR category
BIOCHEMISTRY & MOLECULAR BIOLOGY
JCR impact factor
7.051 (2002)
JCR rank
25/263 (2002)
JCR quartile
1 (2002)
ISSN
0305-1048
DOI
10.1093/nar/30.1.109
language
English
UGent publication?
yes
classification
A1
copyright statement
I have transferred the copyright for this publication to the publisher
id
154120
handle
http://hdl.handle.net/1854/LU-154120
date created
2004-01-14 13:39:00
date last changed
2017-05-05 11:15:09
@article{154120,
  abstract     = {Comparative genomics has shown that ray-finned fish (Actinopterygii) contain more copies of many genes than other vertebrates. A large number of these additional genes appear to have been produced during a genome duplication event that occurred early during the evolution of Actinopterygii (i.e. before the teleost radiation). In addition to this ancient genome duplication event, many lineages within Actinopterygii have experienced more recent genome duplications. Here we introduce a curated database named Wanda that lists groups of orthologous genes with one copy from man, mouse and chicken, one or two from tetraploid Xenopus and two or more ancient copies (i.e. paralogs) from ray-finned fish. The database also contains the sequence alignments and phylogenetic trees that were necessary for determining the correct orthologous and paralogous relationships among genes. Where available, map positions and functional data are also reported. The Wanda database should be of particular use to evolutionary and developmental biologists who are interested in the evolutionary and functional divergence of genes after duplication. Wanda is available at http://www.evolutionsbiologie.uni-konstanz.de/Wanda/.},
  author       = {Van de Peer, Yves and Taylor, John S and Joseph, Jayabalan and Meyer, Axel},
  issn         = {0305-1048},
  journal      = {NUCLEIC ACIDS RESEARCH},
  keyword      = {HOX CLUSTERS,COMPARATIVE GENOMICS,EVOLUTION,ZEBRAFISH,VERTEBRATES,PRESERVATION,EXPRESSION,REDUNDANCY,MAP},
  language     = {eng},
  number       = {1},
  pages        = {109--112},
  title        = {Wanda : a database of duplicated fish genes},
  url          = {http://dx.doi.org/10.1093/nar/30.1.109},
  volume       = {30},
  year         = {2002},
}

Chicago
Van de Peer, Yves, John S Taylor, Jayabalan Joseph, and Axel Meyer. 2002. “Wanda : a Database of Duplicated Fish Genes.” Nucleic Acids Research 30 (1): 109–112.
APA
Van de Peer, Y., Taylor, J. S., Joseph, J., & Meyer, A. (2002). Wanda : a database of duplicated fish genes. NUCLEIC ACIDS RESEARCH, 30(1), 109–112.
Vancouver
1.
Van de Peer Y, Taylor JS, Joseph J, Meyer A. Wanda : a database of duplicated fish genes. NUCLEIC ACIDS RESEARCH. 2002;30(1):109–12.
MLA
Van de Peer, Yves, John S Taylor, Jayabalan Joseph, et al. “Wanda : a Database of Duplicated Fish Genes.” NUCLEIC ACIDS RESEARCH 30.1 (2002): 109–112. Print.