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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

(2002) NUCLEIC ACIDS RESEARCH. 30(1). p.325-327
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Abstract
PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature, supplemented with an increasing number of in silico predicted data. Apart from a general description for specific transcription factor sites, levels of confidence for the experimental evidence, functional information and the position on the promoter are given as well. New features have been implemented to search for plant cis-acting regulatory elements in a query sequence. Furthermore, links are now provided to a new clustering and motif search method to investigate clusters of co-expressed genes. New regulatory elements can be sent automatically and will be added to the database after curation.
Keywords
GENOME

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Citation

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Chicago
Lescot, Magali, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, and Stephane Rombauts. 2002. “PlantCARE, a Database of Plant Cis-acting Regulatory Elements and a Portal to Tools for in Silico Analysis of Promoter Sequences.” Nucleic Acids Research 30 (1): 325–327.
APA
Lescot, M., Déhais, P., Thijs, G., Marchal, K., Moreau, Y., Van de Peer, Y., Rouzé, P., et al. (2002). PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. NUCLEIC ACIDS RESEARCH, 30(1), 325–327.
Vancouver
1.
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. NUCLEIC ACIDS RESEARCH. 2002;30(1):325–7.
MLA
Lescot, Magali, Patrice Déhais, Gert Thijs, et al. “PlantCARE, a Database of Plant Cis-acting Regulatory Elements and a Portal to Tools for in Silico Analysis of Promoter Sequences.” NUCLEIC ACIDS RESEARCH 30.1 (2002): 325–327. Print.
@article{153936,
  abstract     = {PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature, supplemented with an increasing number of in silico predicted data. Apart from a general description for specific transcription factor sites, levels of confidence for the experimental evidence, functional information and the position on the promoter are given as well. New features have been implemented to search for plant cis-acting regulatory elements in a query sequence. Furthermore, links are now provided to a new clustering and motif search method to investigate clusters of co-expressed genes. New regulatory elements can be sent automatically and will be added to the database after curation.},
  author       = {Lescot, Magali and D{\'e}hais, Patrice and Thijs, Gert and Marchal, Kathleen and Moreau, Yves and Van de Peer, Yves and Rouz{\'e}, Pierre and Rombauts, Stephane},
  issn         = {0305-1048},
  journal      = {NUCLEIC ACIDS RESEARCH},
  keyword      = {GENOME},
  language     = {eng},
  number       = {1},
  pages        = {325--327},
  title        = {PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences},
  url          = {http://dx.doi.org/10.1093/nar/30.1.325},
  volume       = {30},
  year         = {2002},
}

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