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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

Magali Lescot UGent, Patrice Déhais UGent, Gert Thijs, Kathleen Marchal UGent, Yves Moreau, Yves Van de Peer UGent, Pierre Rouzé and Stephane Rombauts UGent (2002) NUCLEIC ACIDS RESEARCH. 30(1). p.325-327
abstract
PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature, supplemented with an increasing number of in silico predicted data. Apart from a general description for specific transcription factor sites, levels of confidence for the experimental evidence, functional information and the position on the promoter are given as well. New features have been implemented to search for plant cis-acting regulatory elements in a query sequence. Furthermore, links are now provided to a new clustering and motif search method to investigate clusters of co-expressed genes. New regulatory elements can be sent automatically and will be added to the database after curation.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
GENOME
journal title
NUCLEIC ACIDS RESEARCH
Nucleic Acids Res.
volume
30
issue
1
pages
325 - 327
Web of Science type
Article
Web of Science id
000173077100087
JCR category
BIOCHEMISTRY & MOLECULAR BIOLOGY
JCR impact factor
7.051 (2002)
JCR rank
25/263 (2002)
JCR quartile
1 (2002)
ISSN
0305-1048
DOI
10.1093/nar/30.1.325
language
English
UGent publication?
yes
classification
A1
copyright statement
I have transferred the copyright for this publication to the publisher
id
153936
handle
http://hdl.handle.net/1854/LU-153936
date created
2004-01-14 13:39:00
date last changed
2017-05-05 11:13:24
@article{153936,
  abstract     = {PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature, supplemented with an increasing number of in silico predicted data. Apart from a general description for specific transcription factor sites, levels of confidence for the experimental evidence, functional information and the position on the promoter are given as well. New features have been implemented to search for plant cis-acting regulatory elements in a query sequence. Furthermore, links are now provided to a new clustering and motif search method to investigate clusters of co-expressed genes. New regulatory elements can be sent automatically and will be added to the database after curation.},
  author       = {Lescot, Magali and D{\'e}hais, Patrice and Thijs, Gert and Marchal, Kathleen and Moreau, Yves and Van de Peer, Yves and Rouz{\'e}, Pierre and Rombauts, Stephane},
  issn         = {0305-1048},
  journal      = {NUCLEIC ACIDS RESEARCH},
  keyword      = {GENOME},
  language     = {eng},
  number       = {1},
  pages        = {325--327},
  title        = {PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences},
  url          = {http://dx.doi.org/10.1093/nar/30.1.325},
  volume       = {30},
  year         = {2002},
}

Chicago
Lescot, Magali, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, and Stephane Rombauts. 2002. “PlantCARE, a Database of Plant Cis-acting Regulatory Elements and a Portal to Tools for in Silico Analysis of Promoter Sequences.” Nucleic Acids Research 30 (1): 325–327.
APA
Lescot, M., Déhais, P., Thijs, G., Marchal, K., Moreau, Y., Van de Peer, Y., Rouzé, P., et al. (2002). PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. NUCLEIC ACIDS RESEARCH, 30(1), 325–327.
Vancouver
1.
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. NUCLEIC ACIDS RESEARCH. 2002;30(1):325–7.
MLA
Lescot, Magali, Patrice Déhais, Gert Thijs, et al. “PlantCARE, a Database of Plant Cis-acting Regulatory Elements and a Portal to Tools for in Silico Analysis of Promoter Sequences.” NUCLEIC ACIDS RESEARCH 30.1 (2002): 325–327. Print.