PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
- Author
- Magali Lescot (UGent) , Patrice Déhais (UGent) , Gert Thijs, Kathleen Marchal (UGent) , Yves Moreau, Yves Van de Peer (UGent) , Pierre Rouzé (UGent) and Stephane Rombauts (UGent)
- Organization
- Abstract
- PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature, supplemented with an increasing number of in silico predicted data. Apart from a general description for specific transcription factor sites, levels of confidence for the experimental evidence, functional information and the position on the promoter are given as well. New features have been implemented to search for plant cis-acting regulatory elements in a query sequence. Furthermore, links are now provided to a new clustering and motif search method to investigate clusters of co-expressed genes. New regulatory elements can be sent automatically and will be added to the database after curation.
- Keywords
- GENOME
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-153936
- MLA
- Lescot, Magali, et al. “PlantCARE, a Database of Plant Cis-Acting Regulatory Elements and a Portal to Tools for in Silico Analysis of Promoter Sequences.” NUCLEIC ACIDS RESEARCH, vol. 30, no. 1, 2002, pp. 325–27, doi:10.1093/nar/30.1.325.
- APA
- Lescot, M., Déhais, P., Thijs, G., Marchal, K., Moreau, Y., Van de Peer, Y., … Rombauts, S. (2002). PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. NUCLEIC ACIDS RESEARCH, 30(1), 325–327. https://doi.org/10.1093/nar/30.1.325
- Chicago author-date
- Lescot, Magali, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, and Stephane Rombauts. 2002. “PlantCARE, a Database of Plant Cis-Acting Regulatory Elements and a Portal to Tools for in Silico Analysis of Promoter Sequences.” NUCLEIC ACIDS RESEARCH 30 (1): 325–27. https://doi.org/10.1093/nar/30.1.325.
- Chicago author-date (all authors)
- Lescot, Magali, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, and Stephane Rombauts. 2002. “PlantCARE, a Database of Plant Cis-Acting Regulatory Elements and a Portal to Tools for in Silico Analysis of Promoter Sequences.” NUCLEIC ACIDS RESEARCH 30 (1): 325–327. doi:10.1093/nar/30.1.325.
- Vancouver
- 1.Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. NUCLEIC ACIDS RESEARCH. 2002;30(1):325–7.
- IEEE
- [1]M. Lescot et al., “PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences,” NUCLEIC ACIDS RESEARCH, vol. 30, no. 1, pp. 325–327, 2002.
@article{153936,
abstract = {{PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature, supplemented with an increasing number of in silico predicted data. Apart from a general description for specific transcription factor sites, levels of confidence for the experimental evidence, functional information and the position on the promoter are given as well. New features have been implemented to search for plant cis-acting regulatory elements in a query sequence. Furthermore, links are now provided to a new clustering and motif search method to investigate clusters of co-expressed genes. New regulatory elements can be sent automatically and will be added to the database after curation.}},
author = {{Lescot, Magali and Déhais, Patrice and Thijs, Gert and Marchal, Kathleen and Moreau, Yves and Van de Peer, Yves and Rouzé, Pierre and Rombauts, Stephane}},
issn = {{0305-1048}},
journal = {{NUCLEIC ACIDS RESEARCH}},
keywords = {{GENOME}},
language = {{eng}},
number = {{1}},
pages = {{325--327}},
title = {{PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences}},
url = {{http://doi.org/10.1093/nar/30.1.325}},
volume = {{30}},
year = {{2002}},
}
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