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CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

Pieter Audenaert (UGent) , Thomas Van Parys (UGent) , Florian Brondel (UGent) , Mario Pickavet (UGent) , Piet Demeester (UGent) , Yves Van de Peer (UGent) and Tom Michoel (UGent)
(2011) BIOINFORMATICS. 27(11). p.1587-1588
Author
Organization
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Bioinformatics: from nucleotids to networks (N2N)
Abstract
Network motifs in integrated molecular networks represent functional relationships between distinct data types. They aggregate to form dense topological structures corresponding to functional modules which cannot be detected by traditional graph clustering algorithms. We developed CyClus3D, a Cytoscape plugin for clustering composite three-node network motifs using a 3D spectral clustering algorithm.
Keywords
YEAST, PRINCIPLES, ORGANIZATION

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Citation

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Chicago
Audenaert, Pieter, Thomas Van Parys, Florian Brondel, Mario Pickavet, Piet Demeester, Yves Van de Peer, and Tom Michoel. 2011. “CyClus3D: a Cytoscape Plugin for Clustering Network Motifs in Integrated Networks.” Bioinformatics 27 (11): 1587–1588.
APA
Audenaert, P., Van Parys, T., Brondel, F., Pickavet, M., Demeester, P., Van de Peer, Y., & Michoel, T. (2011). CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. BIOINFORMATICS, 27(11), 1587–1588.
Vancouver
1.
Audenaert P, Van Parys T, Brondel F, Pickavet M, Demeester P, Van de Peer Y, et al. CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. BIOINFORMATICS. 2011;27(11):1587–8.
MLA
Audenaert, Pieter, Thomas Van Parys, Florian Brondel, et al. “CyClus3D: a Cytoscape Plugin for Clustering Network Motifs in Integrated Networks.” BIOINFORMATICS 27.11 (2011): 1587–1588. Print.
@article{1266372,
  abstract     = {Network motifs in integrated molecular networks represent functional relationships between distinct data types. They aggregate to form dense topological structures corresponding to functional modules which cannot be detected by traditional graph clustering algorithms. We developed CyClus3D, a Cytoscape plugin for clustering composite three-node network motifs using a 3D spectral clustering algorithm.},
  author       = {Audenaert, Pieter and Van Parys, Thomas and Brondel, Florian and Pickavet, Mario and Demeester, Piet and Van de Peer, Yves and Michoel, Tom},
  issn         = {1367-4803},
  journal      = {BIOINFORMATICS},
  keyword      = {YEAST,PRINCIPLES,ORGANIZATION},
  language     = {eng},
  number       = {11},
  pages        = {1587--1588},
  title        = {CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks},
  url          = {http://dx.doi.org/10.1093/bioinformatics/btr182},
  volume       = {27},
  year         = {2011},
}

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