CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks
- Author
- P. Audenaert (UGent) , Thomas Van Parys (UGent) , Florian Brondel (UGent) , Mario Pickavet (UGent) , Piet Demeester (UGent) , Yves Van de Peer (UGent) and Tom Michoel (UGent)
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- Project
- Abstract
- Network motifs in integrated molecular networks represent functional relationships between distinct data types. They aggregate to form dense topological structures corresponding to functional modules which cannot be detected by traditional graph clustering algorithms. We developed CyClus3D, a Cytoscape plugin for clustering composite three-node network motifs using a 3D spectral clustering algorithm.
- Keywords
- YEAST, PRINCIPLES, ORGANIZATION
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-1266372
- MLA
- Audenaert, P., et al. “CyClus3D: A Cytoscape Plugin for Clustering Network Motifs in Integrated Networks.” BIOINFORMATICS, vol. 27, no. 11, 2011, pp. 1587–88, doi:10.1093/bioinformatics/btr182.
- APA
- Audenaert, P., Van Parys, T., Brondel, F., Pickavet, M., Demeester, P., Van de Peer, Y., & Michoel, T. (2011). CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. BIOINFORMATICS, 27(11), 1587–1588. https://doi.org/10.1093/bioinformatics/btr182
- Chicago author-date
- Audenaert, P., Thomas Van Parys, Florian Brondel, Mario Pickavet, Piet Demeester, Yves Van de Peer, and Tom Michoel. 2011. “CyClus3D: A Cytoscape Plugin for Clustering Network Motifs in Integrated Networks.” BIOINFORMATICS 27 (11): 1587–88. https://doi.org/10.1093/bioinformatics/btr182.
- Chicago author-date (all authors)
- Audenaert, P., Thomas Van Parys, Florian Brondel, Mario Pickavet, Piet Demeester, Yves Van de Peer, and Tom Michoel. 2011. “CyClus3D: A Cytoscape Plugin for Clustering Network Motifs in Integrated Networks.” BIOINFORMATICS 27 (11): 1587–1588. doi:10.1093/bioinformatics/btr182.
- Vancouver
- 1.Audenaert P, Van Parys T, Brondel F, Pickavet M, Demeester P, Van de Peer Y, et al. CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. BIOINFORMATICS. 2011;27(11):1587–8.
- IEEE
- [1]P. Audenaert et al., “CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks,” BIOINFORMATICS, vol. 27, no. 11, pp. 1587–1588, 2011.
@article{1266372,
abstract = {{Network motifs in integrated molecular networks represent functional relationships between distinct data types. They aggregate to form dense topological structures corresponding to functional modules which cannot be detected by traditional graph clustering algorithms. We developed CyClus3D, a Cytoscape plugin for clustering composite three-node network motifs using a 3D spectral clustering algorithm.}},
author = {{Audenaert, P. and Van Parys, Thomas and Brondel, Florian and Pickavet, Mario and Demeester, Piet and Van de Peer, Yves and Michoel, Tom}},
issn = {{1367-4803}},
journal = {{BIOINFORMATICS}},
keywords = {{YEAST,PRINCIPLES,ORGANIZATION}},
language = {{eng}},
number = {{11}},
pages = {{1587--1588}},
title = {{CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks}},
url = {{http://doi.org/10.1093/bioinformatics/btr182}},
volume = {{27}},
year = {{2011}},
}
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