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CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

Pieter Audenaert UGent, Thomas Van Parys UGent, Florian Brondel UGent, Mario Pickavet UGent, Piet Demeester UGent, Yves Van de Peer UGent and Tom Michoel UGent (2011) BIOINFORMATICS. 27(11). p.1587-1588
abstract
Network motifs in integrated molecular networks represent functional relationships between distinct data types. They aggregate to form dense topological structures corresponding to functional modules which cannot be detected by traditional graph clustering algorithms. We developed CyClus3D, a Cytoscape plugin for clustering composite three-node network motifs using a 3D spectral clustering algorithm.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
YEAST, PRINCIPLES, ORGANIZATION
journal title
BIOINFORMATICS
Bioinformatics
volume
27
issue
11
pages
1587 - 1588
Web of Science type
Article
Web of Science id
000291062400025
JCR category
MATHEMATICAL & COMPUTATIONAL BIOLOGY
JCR impact factor
5.468 (2011)
JCR rank
1/46 (2011)
JCR quartile
1 (2011)
ISSN
1367-4803
DOI
10.1093/bioinformatics/btr182
project
Bioinformatics: from nucleotids to networks (N2N)
language
English
UGent publication?
yes
classification
A1
copyright statement
I have transferred the copyright for this publication to the publisher
id
1266372
handle
http://hdl.handle.net/1854/LU-1266372
date created
2011-06-16 16:15:39
date last changed
2013-02-27 09:11:19
@article{1266372,
  abstract     = {Network motifs in integrated molecular networks represent functional relationships between distinct data types. They aggregate to form dense topological structures corresponding to functional modules which cannot be detected by traditional graph clustering algorithms. We developed CyClus3D, a Cytoscape plugin for clustering composite three-node network motifs using a 3D spectral clustering algorithm.},
  author       = {Audenaert, Pieter and Van Parys, Thomas and Brondel, Florian and Pickavet, Mario and Demeester, Piet and Van de Peer, Yves and Michoel, Tom},
  issn         = {1367-4803},
  journal      = {BIOINFORMATICS},
  keyword      = {YEAST,PRINCIPLES,ORGANIZATION},
  language     = {eng},
  number       = {11},
  pages        = {1587--1588},
  title        = {CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks},
  url          = {http://dx.doi.org/10.1093/bioinformatics/btr182},
  volume       = {27},
  year         = {2011},
}

Chicago
Audenaert, Pieter, Thomas Van Parys, Florian Brondel, Mario Pickavet, Piet Demeester, Yves Van de Peer, and Tom Michoel. 2011. “CyClus3D: a Cytoscape Plugin for Clustering Network Motifs in Integrated Networks.” Bioinformatics 27 (11): 1587–1588.
APA
Audenaert, P., Van Parys, T., Brondel, F., Pickavet, M., Demeester, P., Van de Peer, Y., & Michoel, T. (2011). CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. BIOINFORMATICS, 27(11), 1587–1588.
Vancouver
1.
Audenaert P, Van Parys T, Brondel F, Pickavet M, Demeester P, Van de Peer Y, et al. CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. BIOINFORMATICS. 2011;27(11):1587–8.
MLA
Audenaert, Pieter, Thomas Van Parys, Florian Brondel, et al. “CyClus3D: a Cytoscape Plugin for Clustering Network Motifs in Integrated Networks.” BIOINFORMATICS 27.11 (2011): 1587–1588. Print.