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Expanding the spectrum of FOXC1 and PITX2 mutations and copy number changes in patients with anterior segment malformations

Barbara D'haene UGent, Françoise Meire, Ilse Claerhout UGent, Hester Y Kroes, Astrid Plomp, Yvonne H Arens, Thomy de Ravel, Ingele Casteels, SARAH DE JAEGERE UGent and SALLY HOOGHE UGent, et al. (2011) INVESTIGATIVE OPHTHALMOLOGY. 52(1). p.324-333
abstract
PURPOSE. Anterior segment dysgenesis (ASD) comprises a heterogeneous group of developmental abnormalities that affect several structures of the anterior segment of the eye. The main purpose of this study was to assess the proportion of FOXC1 and PITX2 mutations and copy number changes in 80 probands with ASD. METHODS. The patients were examined for FOXC1 and PITX2 copy number changes and mutations using MLPA (multiplex ligation-dependent probe amplification) and direct sequencing. Subsequently, the identified copy number changes were fine-mapped using high-resolution microarrays. In the remaining mutation-negative patients, sequencing of the FOXC1 and-PITX2 3' untranslated regions (UTRs) and three other candidate genes (P32, PDP2, and FOXC2) was performed. RESULTS. Thirteen FOXC1 and eight PITX2 mutations were identified, accounting for 26% (21/80) of the cases. In addition, six FOXC1 and five PITX2 deletions were found, explaining 14% (11/80) of the cases. The smallest FOXC1 and PITX2 deletions were 5.4 and 1.6 kb in size, respectively. Six patients carrying FOXC1 deletions presented with variable extraocular phenotypic features such as hearing defects (in 4/6) and mental retardation (in 2/6). No further genetic defects were found in the remaining mutation-negative patients. CONCLUSIONS. FOXC1 and PITX2 genetic defects explain 40% of our large ASD cohort. The current spectrum of intragenic FOXC1 and PITX2 mutations was extended considerably, the identified copy number changes were fine mapped, the smallest FOXC1 and PITX2 deletions reported so far were identified, and the need for dedicated copy number screening of the FOXC1 and PITX2 genomic landscape was emphasized. This study is unique in that sequence and copy number changes were screened simultaneously in both genes.
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
GLAUCOMA, PROTEIN, MICRODELETIONS, FKHL7 GENE, CHROMOSOME 6P25, AXENFELD-RIEGER-SYNDROME, TRANSCRIPTION FACTOR GENE, DELETION, DUPLICATIONS, TARGET
journal title
INVESTIGATIVE OPHTHALMOLOGY
Invest. Ophthalmol. Vis. Sci.
volume
52
issue
1
pages
324 - 333
Web of Science type
Article
Web of Science id
000287097400001
JCR category
OPHTHALMOLOGY
JCR impact factor
3.597 (2011)
JCR rank
6/56 (2011)
JCR quartile
1 (2011)
ISSN
0146-0404
DOI
10.1167/iovs.10-5309
language
English
UGent publication?
yes
classification
A1
copyright statement
I have transferred the copyright for this publication to the publisher
id
1150856
handle
http://hdl.handle.net/1854/LU-1150856
date created
2011-02-15 11:06:49
date last changed
2014-07-14 09:37:58
@article{1150856,
  abstract     = {PURPOSE. Anterior segment dysgenesis (ASD) comprises a heterogeneous group of developmental abnormalities that affect several structures of the anterior segment of the eye. The main purpose of this study was to assess the proportion of FOXC1 and PITX2 mutations and copy number changes in 80 probands with ASD.
METHODS. The patients were examined for FOXC1 and PITX2 copy number changes and mutations using MLPA (multiplex ligation-dependent probe amplification) and direct sequencing. Subsequently, the identified copy number changes were fine-mapped using high-resolution microarrays. In the remaining mutation-negative patients, sequencing of the FOXC1 and-PITX2 3' untranslated regions (UTRs) and three other candidate genes (P32, PDP2, and FOXC2) was performed.
RESULTS. Thirteen FOXC1 and eight PITX2 mutations were identified, accounting for 26\% (21/80) of the cases. In addition, six FOXC1 and five PITX2 deletions were found, explaining 14\% (11/80) of the cases. The smallest FOXC1 and PITX2 deletions were 5.4 and 1.6 kb in size, respectively. Six patients carrying FOXC1 deletions presented with variable extraocular phenotypic features such as hearing defects (in 4/6) and mental retardation (in 2/6). No further genetic defects were found in the remaining mutation-negative patients.
CONCLUSIONS. FOXC1 and PITX2 genetic defects explain 40\% of our large ASD cohort. The current spectrum of intragenic FOXC1 and PITX2 mutations was extended considerably, the identified copy number changes were fine mapped, the smallest FOXC1 and PITX2 deletions reported so far were identified, and the need for dedicated copy number screening of the FOXC1 and PITX2 genomic landscape was emphasized. This study is unique in that sequence and copy number changes were screened simultaneously in both genes.},
  author       = {D'haene, Barbara and Meire, Fran\c{c}oise and Claerhout, Ilse and Kroes, Hester Y and Plomp, Astrid and Arens, Yvonne H and de Ravel, Thomy and Casteels, Ingele and DE JAEGERE, SARAH and HOOGHE, SALLY and Wuyts, Wim and van den Ende, Jenneke and Roulez, Fran\c{c}oise and Veenstra-Knol, Hermine E and Oldenburg, Rogier A and Giltay, Jacques and Verheij, Johanna BGM and de Faber, Jan-Tjeerd and Menten, Bj{\"o}rn and De Paepe, Anne and Kestelyn, Philippe and Leroy, Bart and De Baere, Elfride},
  issn         = {0146-0404},
  journal      = {INVESTIGATIVE OPHTHALMOLOGY},
  keyword      = {GLAUCOMA,PROTEIN,MICRODELETIONS,FKHL7 GENE,CHROMOSOME 6P25,AXENFELD-RIEGER-SYNDROME,TRANSCRIPTION FACTOR GENE,DELETION,DUPLICATIONS,TARGET},
  language     = {eng},
  number       = {1},
  pages        = {324--333},
  title        = {Expanding the spectrum of FOXC1 and PITX2 mutations and copy number changes in patients with anterior segment malformations},
  url          = {http://dx.doi.org/10.1167/iovs.10-5309},
  volume       = {52},
  year         = {2011},
}

Chicago
D’haene, Barbara, Françoise Meire, Ilse Claerhout, Hester Y Kroes, Astrid Plomp, Yvonne H Arens, Thomy de Ravel, et al. 2011. “Expanding the Spectrum of FOXC1 and PITX2 Mutations and Copy Number Changes in Patients with Anterior Segment Malformations.” Investigative Ophthalmology 52 (1): 324–333.
APA
D’haene, Barbara, Meire, F., Claerhout, I., Kroes, H. Y., Plomp, A., Arens, Y. H., de Ravel, T., et al. (2011). Expanding the spectrum of FOXC1 and PITX2 mutations and copy number changes in patients with anterior segment malformations. INVESTIGATIVE OPHTHALMOLOGY, 52(1), 324–333.
Vancouver
1.
D’haene B, Meire F, Claerhout I, Kroes HY, Plomp A, Arens YH, et al. Expanding the spectrum of FOXC1 and PITX2 mutations and copy number changes in patients with anterior segment malformations. INVESTIGATIVE OPHTHALMOLOGY. 2011;52(1):324–33.
MLA
D’haene, Barbara, Françoise Meire, Ilse Claerhout, et al. “Expanding the Spectrum of FOXC1 and PITX2 Mutations and Copy Number Changes in Patients with Anterior Segment Malformations.” INVESTIGATIVE OPHTHALMOLOGY 52.1 (2011): 324–333. Print.