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TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

Eric Bonnet (UGent), Ying He, Kenny Billiau (UGent) and Yves Van de Peer (UGent)
(2010) BIOINFORMATICS. 26(12). p.1566-1568
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Abstract
We present a new web server called TAPIR, designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA-target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA-target duplex having a large loop, making them undetectable by traditional tools.
Keywords
ARABIDOPSIS, SIRNA

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Citation

Please use this url to cite or link to this publication:

Chicago
Bonnet, Eric, Ying He, Kenny Billiau, and Yves Van de Peer. 2010. “TAPIR, a Web Server for the Prediction of Plant microRNA Targets, Including Target Mimics.” Bioinformatics 26 (12): 1566–1568.
APA
Bonnet, E., He, Y., Billiau, K., & Van de Peer, Y. (2010). TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. BIOINFORMATICS, 26(12), 1566–1568.
Vancouver
1.
Bonnet E, He Y, Billiau K, Van de Peer Y. TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. BIOINFORMATICS. 2010;26(12):1566–8.
MLA
Bonnet, Eric, Ying He, Kenny Billiau, et al. “TAPIR, a Web Server for the Prediction of Plant microRNA Targets, Including Target Mimics.” BIOINFORMATICS 26.12 (2010): 1566–1568. Print.
@article{1008305,
  abstract     = {We present a new web server called TAPIR, designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA-target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA-target duplex having a large loop, making them undetectable by traditional tools.},
  author       = {Bonnet, Eric and He, Ying and Billiau, Kenny and Van de Peer, Yves},
  issn         = {1367-4803},
  journal      = {BIOINFORMATICS},
  keyword      = {ARABIDOPSIS,SIRNA},
  language     = {eng},
  number       = {12},
  pages        = {1566--1568},
  title        = {TAPIR, a web server for the prediction of plant microRNA targets, including target mimics},
  url          = {http://dx.doi.org/10.1093/bioinformatics/btq233},
  volume       = {26},
  year         = {2010},
}

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