Single-cell analysis of yeast surface display for designer cellulosome applications using a fluorescent protein complex
- Author
- Babette Lamote (UGent) , Emma Cremelie (UGent) , Kristel Demeyere (UGent) , Philippe De Groote (UGent) , Dennis Grimon (UGent) , Julie Vanderstraeten (UGent) , Evelyne Meyer (UGent) , Marjan De Mey (UGent) and Yves Briers (UGent)
- Organization
- Project
-
- Valorisation of industrial bio-based side streams with designer cellulosomics
- A technological chain for the development of antibacterial lysins against fermentation contaminants and infectious diseases
- Designer cellulosomics for a customized conversion of lignocellulosic biomass to bioethanol
- Designer cellulosomics for customized solutions towards sustainable bioethanol production
- Abstract
- Designer cellulosomes (DCs) are precisely engineered multi-enzyme complexes aimed at lignocellulose saccharification. Achieving spontaneous designer cellulosome display on yeast cell surfaces has been a long-term objective to enhance consolidated bioprocesses with concurrent ethanol production. A “self-assembly” approach involves simultaneous scaffoldin display and docking enzyme secretion. However, challenges arise from the size and complexity of designer cellulosomes, coupled with the yeast cells’ limited capacity for heterologous protein expression. A comprehensive examination of Saccharomyces cerevisiae as a host for DC expression remains unaddressed. We meticulously examined the capability of S. cerevisiae to produce and display a fluorescent protein complex, which mimics the designer cellulosome architecture and allows for convenient detection of all individual components on the cell surface, using flow cytometry and confocal microscopy. Population-wide analysis revealed a fluorescent protein complex production efficiency of approximately 10%. Single-cell analysis highlighted a clear mutual influence between the expression of scaffoldin and docking proteins, impacting cellular fitness. Newly emerging buds were identified as hotspots for scaffoldin display. The finite capacity of yeast cells to produce heterologous proteins was identified as a major bottleneck. While distributing the cellular load among multiple hosts within a synthetic yeast consortium can alleviate this burden, the use of fluorescent protein complex surface display has visualized the heterogeneity and constraints of S. cerevisiae as a host for designer cellulosome expression at the population and single cell level. This study provides a realistic assessment of the challenges in achieving efficient S. cerevisiae-based DC display for consolidated bioprocessing.
- Keywords
- designer cellulosomes, Saccharomyces cerevisiae, yeast surface display, flow cytometry, confocal microscopy, fluorescent proteins, SACCHAROMYCES-CEREVISIAE, ETHANOL, SACCHARIFICATION, MINICELLULOSOME, NANOMACHINES, SECRETION
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01K2YAH5ACN0J2PXNFMQ0JKVAG
- MLA
- Lamote, Babette, et al. “Single-Cell Analysis of Yeast Surface Display for Designer Cellulosome Applications Using a Fluorescent Protein Complex.” MICROBIOLOGY SPECTRUM, vol. 13, no. 9, 2025, doi:10.1128/spectrum.00750-25.
- APA
- Lamote, B., Cremelie, E., Demeyere, K., De Groote, P., Grimon, D., Vanderstraeten, J., … Briers, Y. (2025). Single-cell analysis of yeast surface display for designer cellulosome applications using a fluorescent protein complex. MICROBIOLOGY SPECTRUM, 13(9). https://doi.org/10.1128/spectrum.00750-25
- Chicago author-date
- Lamote, Babette, Emma Cremelie, Kristel Demeyere, Philippe De Groote, Dennis Grimon, Julie Vanderstraeten, Evelyne Meyer, Marjan De Mey, and Yves Briers. 2025. “Single-Cell Analysis of Yeast Surface Display for Designer Cellulosome Applications Using a Fluorescent Protein Complex.” MICROBIOLOGY SPECTRUM 13 (9). https://doi.org/10.1128/spectrum.00750-25.
- Chicago author-date (all authors)
- Lamote, Babette, Emma Cremelie, Kristel Demeyere, Philippe De Groote, Dennis Grimon, Julie Vanderstraeten, Evelyne Meyer, Marjan De Mey, and Yves Briers. 2025. “Single-Cell Analysis of Yeast Surface Display for Designer Cellulosome Applications Using a Fluorescent Protein Complex.” MICROBIOLOGY SPECTRUM 13 (9). doi:10.1128/spectrum.00750-25.
- Vancouver
- 1.Lamote B, Cremelie E, Demeyere K, De Groote P, Grimon D, Vanderstraeten J, et al. Single-cell analysis of yeast surface display for designer cellulosome applications using a fluorescent protein complex. MICROBIOLOGY SPECTRUM. 2025;13(9).
- IEEE
- [1]B. Lamote et al., “Single-cell analysis of yeast surface display for designer cellulosome applications using a fluorescent protein complex,” MICROBIOLOGY SPECTRUM, vol. 13, no. 9, 2025.
@article{01K2YAH5ACN0J2PXNFMQ0JKVAG,
abstract = {{Designer cellulosomes (DCs) are precisely engineered multi-enzyme complexes aimed at lignocellulose saccharification. Achieving spontaneous designer cellulosome display on yeast cell surfaces has been a long-term objective to enhance consolidated bioprocesses with concurrent ethanol production. A “self-assembly” approach involves simultaneous scaffoldin display and docking enzyme secretion. However, challenges arise from the size and complexity of designer cellulosomes, coupled with the yeast cells’ limited capacity for heterologous protein expression. A comprehensive examination of Saccharomyces cerevisiae as a host for DC expression remains unaddressed. We meticulously examined the capability of S. cerevisiae to produce and display a fluorescent protein complex, which mimics the designer cellulosome architecture and allows for convenient detection of all individual components on the cell surface, using flow cytometry and confocal microscopy. Population-wide analysis revealed a fluorescent protein complex production efficiency of approximately 10%. Single-cell analysis highlighted a clear mutual influence between the expression of scaffoldin and docking proteins, impacting cellular fitness. Newly emerging buds were identified as hotspots for scaffoldin display. The finite capacity of yeast cells to produce heterologous proteins was identified as a major bottleneck. While distributing the cellular load among multiple hosts within a synthetic yeast consortium can alleviate this burden, the use of fluorescent protein complex surface display has visualized the heterogeneity and constraints of S. cerevisiae as a host for designer cellulosome expression at the population and single cell level. This study provides a realistic assessment of the challenges in achieving efficient S. cerevisiae-based DC display for consolidated bioprocessing.}},
articleno = {{e00750-25}},
author = {{Lamote, Babette and Cremelie, Emma and Demeyere, Kristel and De Groote, Philippe and Grimon, Dennis and Vanderstraeten, Julie and Meyer, Evelyne and De Mey, Marjan and Briers, Yves}},
issn = {{2165-0497}},
journal = {{MICROBIOLOGY SPECTRUM}},
keywords = {{designer cellulosomes,Saccharomyces cerevisiae,yeast surface display,flow cytometry,confocal microscopy,fluorescent proteins,SACCHAROMYCES-CEREVISIAE,ETHANOL,SACCHARIFICATION,MINICELLULOSOME,NANOMACHINES,SECRETION}},
language = {{eng}},
number = {{9}},
pages = {{16}},
title = {{Single-cell analysis of yeast surface display for designer cellulosome applications using a fluorescent protein complex}},
url = {{http://doi.org/10.1128/spectrum.00750-25}},
volume = {{13}},
year = {{2025}},
}
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