KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death
- Author
- Nicolas Doll (UGent) , Yannick Fierlej, Thomas Eekhout (UGent) , Lisa Elias, Clément Bellot, Geng Sun (UGent) , Carolin Seyfferth (UGent) , Stijn Aesaert (UGent) , Griet Coussens (UGent) , Riet De Rycke (UGent) , Mária Braun Šimášková (UGent) , Emilie Montes, Chloé Plagnard, Peter M. Rogowsky, Yemisrach Melkie Abebaw, Mohammed Bendahmane, Bert De Rybel (UGent) , Laurens Pauwels (UGent) , Thomas Widiez and Moritz Nowack (UGent)
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- Project
- Abstract
- The endosperm is a transient nutritive tissue in plant seeds. During maize (Zea mays) grain development, two distinct endosperm cell death processes occur: in one process, the endosperm adjacent to the embryo scutellum (EAS) is completely dismantled; in the other, the starchy endosperm (SE) retains nutrient-packed cell corpses after grain filling. Here, we show that SE cell death degrades some organelles including the mitochondria and the endoplasmic reticulum, while preserving protein bodies, starch granules, and chromatin. In contrast, EAS cells undergo lytic cell death to remobilize stored nutrients through a complex corpse clearance process. Using single-cell transcriptome analysis, we identified two NAC transcription factors, KIRA-LIKE 1 (KIL1) and 2 (KIL2), as specifically upregulated in the EAS. Analyses using dominant and recessive loss-of-function kil mutants demonstrate that these genes redundantly promote cell death and corpse clearance in the EAS, but are not required for SE cell death. Reduced EAS cell death in kil loss-of-function mutants strongly impeded embryo growth, indicating that EAS elimination is crucial for optimal embryo development. Notably, kil1 and kil2 expression is regulated by DOSAGE-EFFECT DEFECTIVE1, an imprinted paternally expressed endosperm transcription factor. Our findings suggest paternal control over EAS cell death and the embryo-endosperm size ratio in maize, providing new leads to modulate this agronomically important trait.
- Keywords
- Zea mays, corn, embryo, embryo-endosperm interactions, endosperm, grain, imprinting, kernel, maize, programmed cell death, seed, single-nucleus RNA-sequencing
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01JZ84F62J0DTNT1GE4JQBP9ZZ
- MLA
- Doll, Nicolas, et al. “KIL Transcription Factors Facilitate Embryo Growth in Maize by Promoting Endosperm Elimination via Lytic Cell Death.” PLANT CELL, vol. 37, no. 7, 2025, doi:10.1093/plcell/koaf162.
- APA
- Doll, N., Fierlej, Y., Eekhout, T., Elias, L., Bellot, C., Sun, G., … Nowack, M. (2025). KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death. PLANT CELL, 37(7). https://doi.org/10.1093/plcell/koaf162
- Chicago author-date
- Doll, Nicolas, Yannick Fierlej, Thomas Eekhout, Lisa Elias, Clément Bellot, Geng Sun, Carolin Seyfferth, et al. 2025. “KIL Transcription Factors Facilitate Embryo Growth in Maize by Promoting Endosperm Elimination via Lytic Cell Death.” PLANT CELL 37 (7). https://doi.org/10.1093/plcell/koaf162.
- Chicago author-date (all authors)
- Doll, Nicolas, Yannick Fierlej, Thomas Eekhout, Lisa Elias, Clément Bellot, Geng Sun, Carolin Seyfferth, Stijn Aesaert, Griet Coussens, Riet De Rycke, Mária Braun Šimášková, Emilie Montes, Chloé Plagnard, Peter M. Rogowsky, Yemisrach Melkie Abebaw, Mohammed Bendahmane, Bert De Rybel, Laurens Pauwels, Thomas Widiez, and Moritz Nowack. 2025. “KIL Transcription Factors Facilitate Embryo Growth in Maize by Promoting Endosperm Elimination via Lytic Cell Death.” PLANT CELL 37 (7). doi:10.1093/plcell/koaf162.
- Vancouver
- 1.Doll N, Fierlej Y, Eekhout T, Elias L, Bellot C, Sun G, et al. KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death. PLANT CELL. 2025;37(7).
- IEEE
- [1]N. Doll et al., “KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death,” PLANT CELL, vol. 37, no. 7, 2025.
@article{01JZ84F62J0DTNT1GE4JQBP9ZZ,
abstract = {{The endosperm is a transient nutritive tissue in plant seeds. During maize (Zea mays) grain development, two distinct endosperm cell death processes occur: in one process, the endosperm adjacent to the embryo scutellum (EAS) is completely dismantled; in the other, the starchy endosperm (SE) retains nutrient-packed cell corpses after grain filling. Here, we show that SE cell death degrades some organelles including the mitochondria and the endoplasmic reticulum, while preserving protein bodies, starch granules, and chromatin. In contrast, EAS cells undergo lytic cell death to remobilize stored nutrients through a complex corpse clearance process. Using single-cell transcriptome analysis, we identified two NAC transcription factors, KIRA-LIKE 1 (KIL1) and 2 (KIL2), as specifically upregulated in the EAS. Analyses using dominant and recessive loss-of-function kil mutants demonstrate that these genes redundantly promote cell death and corpse clearance in the EAS, but are not required for SE cell death. Reduced EAS cell death in kil loss-of-function mutants strongly impeded embryo growth, indicating that EAS elimination is crucial for optimal embryo development. Notably, kil1 and kil2 expression is regulated by DOSAGE-EFFECT DEFECTIVE1, an imprinted paternally expressed endosperm transcription factor. Our findings suggest paternal control over EAS cell death and the embryo-endosperm size ratio in maize, providing new leads to modulate this agronomically important trait.}},
articleno = {{koaf162}},
author = {{Doll, Nicolas and Fierlej, Yannick and Eekhout, Thomas and Elias, Lisa and Bellot, Clément and Sun, Geng and Seyfferth, Carolin and Aesaert, Stijn and Coussens, Griet and De Rycke, Riet and Braun Šimášková, Mária and Montes, Emilie and Plagnard, Chloé and Rogowsky, Peter M. and Abebaw, Yemisrach Melkie and Bendahmane, Mohammed and De Rybel, Bert and Pauwels, Laurens and Widiez, Thomas and Nowack, Moritz}},
issn = {{1040-4651}},
journal = {{PLANT CELL}},
keywords = {{Zea mays,corn,embryo,embryo-endosperm interactions,endosperm,grain,imprinting,kernel,maize,programmed cell death,seed,single-nucleus RNA-sequencing}},
language = {{eng}},
number = {{7}},
pages = {{38}},
title = {{KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death}},
url = {{http://doi.org/10.1093/plcell/koaf162}},
volume = {{37}},
year = {{2025}},
}
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