@misc{01JHJDVKXN2SZQV6A3BY73WGFP,
  abstract     = {{The GitHub repository contains a list of scripts for the analysis of Oxford Nanopore sequencing data, including:
- Dorado for barcode classification and basecalling.
- NanoPlot and FastQC for read statistics report.
- Porechop for adapters removal.
- BBMap for read quality filtering.
- Flye for read assembly.
- Medaka for assembly polishing.
- Quast for assembly statistics.
- CheckM for genome completeness estimation.
- SAMtools for genome coverage calculation.
- Mauve for genome reordering.
- Prokka for genome annotation.
- ABRicate for antimicrobial resistance screening.
- Roary for pangenome construction.}},
  author       = {{Ortega Sanz, Irene}},
  keywords     = {{Bioinformatics,Nanopore sequencing,Genomics}},
  language     = {{eng}},
  publisher    = {{Zenodo}},
  title        = {{ONT_data_analysis v1.0}},
  url          = {{http://doi.org/10.5281/ZENODO.14645009}},
  year         = {{2025}},
}

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