Proteomics- and metabolomics-based analysis of the regulation of germination in Norway maple and sycamore embryonic axes
- Author
- Ewa Marzena Kalemba, Sara Dufour (UGent) , Kris Gevaert (UGent) , Francis Impens (UGent) and Patrice Meimoun
- Organization
- Abstract
- Norway maple and sycamore belong to the Acer genus and produce desiccation-tolerant and desiccation-sensitive seeds, respectively. We investigated the seed germination process at the imbibed and germinated stages using metabolomic and proteomic approaches to determine why sycamore seeds germinate earlier and are more successful at establishing seedlings than Norway maple seeds under controlled conditions. Embryonic axes and embryonic axes with protruded radicles were analyzed at the imbibed and germinated stages, respectively. Among the 212 identified metabolites, 44 and 67 differentially abundant metabolites were found at the imbibed and germinated stages, respectively, in both Acer species. Higher levels of amines, growth and defense stimulants, including B vitamins, were found in sycamore. We identified 611 and 447 proteins specific to the imbibed and germinated stages, respectively, in addition to groups of proteins expressed at different levels. Functional analysis of significantly regulated proteins revealed that proteins with catalytic and binding activity were enriched during germination, and proteins possibly implicated in nitrogen metabolism and metabolite interconversion enzymes were the predominant classes. Proteins associated with the control of plant growth regulation and seed defense were observed in both species at both germination stages. Sycamore proteins possibly involved in abscisic acid signal transduction pathway, stress tolerance and alleviation, ion binding and oxygenase activities appeared to accompany germination in sycamore. We identified peptides containing methionine (Met) oxidized to methionine sulfoxide (MetO), and functional analyses of proteins with significantly regulated MetO sites revealed that translation, plant growth and development and metabolism of nitrogen compounds were the main processes under Met/MetO redox control. We propose that higher levels of storage proteins and amines, together with higher levels of B vitamins, supported more efficient nitrogen utilization in sycamore, resulting in faster seedling growth. In conclusion, omic signatures identified in sycamore seem to predispose germinated sycamore seeds to better postgerminative growth.
- Keywords
- Acer platanoides, Acer pseudoplatanus, metabolite profiling, methionine sulfoxide, posttranslational modification, redox status, seed physiology, vitamin B, SEED-GERMINATION, MITOCHONDRIAL BIOGENESIS, STRESS, GENE, BIOSYNTHESIS, METABOLISM, EXPRESSION, RICE, L., INITIATION
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01JHJ6HWQQ9DR35N3NFR3HW4YE
- MLA
- Kalemba, Ewa Marzena, et al. “Proteomics- and Metabolomics-Based Analysis of the Regulation of Germination in Norway Maple and Sycamore Embryonic Axes.” TREE PHYSIOLOGY, vol. 45, no. 2, 2025, doi:10.1093/treephys/tpaf003.
- APA
- Kalemba, E. M., Dufour, S., Gevaert, K., Impens, F., & Meimoun, P. (2025). Proteomics- and metabolomics-based analysis of the regulation of germination in Norway maple and sycamore embryonic axes. TREE PHYSIOLOGY, 45(2). https://doi.org/10.1093/treephys/tpaf003
- Chicago author-date
- Kalemba, Ewa Marzena, Sara Dufour, Kris Gevaert, Francis Impens, and Patrice Meimoun. 2025. “Proteomics- and Metabolomics-Based Analysis of the Regulation of Germination in Norway Maple and Sycamore Embryonic Axes.” TREE PHYSIOLOGY 45 (2). https://doi.org/10.1093/treephys/tpaf003.
- Chicago author-date (all authors)
- Kalemba, Ewa Marzena, Sara Dufour, Kris Gevaert, Francis Impens, and Patrice Meimoun. 2025. “Proteomics- and Metabolomics-Based Analysis of the Regulation of Germination in Norway Maple and Sycamore Embryonic Axes.” TREE PHYSIOLOGY 45 (2). doi:10.1093/treephys/tpaf003.
- Vancouver
- 1.Kalemba EM, Dufour S, Gevaert K, Impens F, Meimoun P. Proteomics- and metabolomics-based analysis of the regulation of germination in Norway maple and sycamore embryonic axes. TREE PHYSIOLOGY. 2025;45(2).
- IEEE
- [1]E. M. Kalemba, S. Dufour, K. Gevaert, F. Impens, and P. Meimoun, “Proteomics- and metabolomics-based analysis of the regulation of germination in Norway maple and sycamore embryonic axes,” TREE PHYSIOLOGY, vol. 45, no. 2, 2025.
@article{01JHJ6HWQQ9DR35N3NFR3HW4YE,
abstract = {{Norway maple and sycamore belong to the Acer genus and produce desiccation-tolerant and desiccation-sensitive seeds, respectively. We investigated the seed germination process at the imbibed and germinated stages using metabolomic and proteomic approaches to determine why sycamore seeds germinate earlier and are more successful at establishing seedlings than Norway maple seeds under controlled conditions. Embryonic axes and embryonic axes with protruded radicles were analyzed at the imbibed and germinated stages, respectively. Among the 212 identified metabolites, 44 and 67 differentially abundant metabolites were found at the imbibed and germinated stages, respectively, in both Acer species. Higher levels of amines, growth and defense stimulants, including B vitamins, were found in sycamore. We identified 611 and 447 proteins specific to the imbibed and germinated stages, respectively, in addition to groups of proteins expressed at different levels. Functional analysis of significantly regulated proteins revealed that proteins with catalytic and binding activity were enriched during germination, and proteins possibly implicated in nitrogen metabolism and metabolite interconversion enzymes were the predominant classes. Proteins associated with the control of plant growth regulation and seed defense were observed in both species at both germination stages. Sycamore proteins possibly involved in abscisic acid signal transduction pathway, stress tolerance and alleviation, ion binding and oxygenase activities appeared to accompany germination in sycamore. We identified peptides containing methionine (Met) oxidized to methionine sulfoxide (MetO), and functional analyses of proteins with significantly regulated MetO sites revealed that translation, plant growth and development and metabolism of nitrogen compounds were the main processes under Met/MetO redox control. We propose that higher levels of storage proteins and amines, together with higher levels of B vitamins, supported more efficient nitrogen utilization in sycamore, resulting in faster seedling growth. In conclusion, omic signatures identified in sycamore seem to predispose germinated sycamore seeds to better postgerminative growth.}},
articleno = {{tpaf003}},
author = {{Kalemba, Ewa Marzena and Dufour, Sara and Gevaert, Kris and Impens, Francis and Meimoun, Patrice}},
issn = {{0829-318X}},
journal = {{TREE PHYSIOLOGY}},
keywords = {{Acer platanoides,Acer pseudoplatanus,metabolite profiling,methionine sulfoxide,posttranslational modification,redox status,seed physiology,vitamin B,SEED-GERMINATION,MITOCHONDRIAL BIOGENESIS,STRESS,GENE,BIOSYNTHESIS,METABOLISM,EXPRESSION,RICE,L.,INITIATION}},
language = {{eng}},
number = {{2}},
pages = {{23}},
title = {{Proteomics- and metabolomics-based analysis of the regulation of germination in Norway maple and sycamore embryonic axes}},
url = {{http://doi.org/10.1093/treephys/tpaf003}},
volume = {{45}},
year = {{2025}},
}
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