
A 69 long noncoding RNA signature predicts relapse and acts as independent prognostic factor in pediatric AML
- Author
- Zhiyao Ren (UGent) , Jolien Vanhooren (UGent) , Charlotte Derpoorter (UGent) , Barbara De Moerloose (UGent) and Tim Lammens (UGent)
- Organization
- Abstract
- Risk stratification using genetics and minimal residual disease (MRD) has allowed to increase the cure rates of pediatric acute myeloid leukemia (pedAML) up to 70% in contemporary protocols. Nevertheless, approximately 30% of patients still experience relapse, indicating a need to optimize stratification strategies. Recently, long non-coding RNA (lncRNA) expression has been shown to hold prognostic power in multiple cancer types. Here, we aimed at refining relapse prediction in pedAML using lncRNA expression. We built a relapse-related lncRNA prognostic signature, named AMLlnc69, using 871 pedAML patients transcriptomes obtained from the Therapeutically Applicable Research To Generate Effective Treatments (TARGET) repository. We identified a 69 lncRNA signature AMLlnc69 that is highly predictive of relapse-risk (c-index = 0.73), with area under the ROC curve (AUC) values for predicting the 1-, 2-, and 3-year relapse-free survival (RFS) of 0.78, 0.77, and 0.77, respectively. The internal validation using a bootstrap method (resampling times = 1000) resulted in a c-index of 0.72 and AUC values for predicting the 1-, 2-, and 3-year RFS of 0.77, 0.76, and 0.76, respectively. Through a Cox regression analysis, AMLlnc69, NPM mutation and WBC at diagnosis were identified as independent predictors of RFS. Finally, a nomogram was build using these two parameters, showing a c-index of 0.80 and 0.71 after bootstrapping (n =1000). In conclusion, the identified AMLlnc69 will, after prospective validation, add important information to guide management of pedAML patients. The nomogram is a promising tool for easy stratification of patients into a novel scheme of relapse-risk groups.
- Keywords
- ACUTE MYELOID-LEUKEMIA, FLOW-CYTOMETRY, EXPRESSION, ONCOLOGY, RESISTANCE, CHILDHOOD, CHILDREN, SURVIVAL, MODELS, RISK
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Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01HW86Z3F86C89EQYXVDWMV9WG
- MLA
- Ren, Zhiyao, et al. “A 69 Long Noncoding RNA Signature Predicts Relapse and Acts as Independent Prognostic Factor in Pediatric AML.” BLOOD ADVANCES, vol. 8, no. 12, 2024, pp. 3299–310, doi:10.1182/bloodadvances.2024012667.
- APA
- Ren, Z., Vanhooren, J., Derpoorter, C., De Moerloose, B., & Lammens, T. (2024). A 69 long noncoding RNA signature predicts relapse and acts as independent prognostic factor in pediatric AML. BLOOD ADVANCES, 8(12), 3299–3310. https://doi.org/10.1182/bloodadvances.2024012667
- Chicago author-date
- Ren, Zhiyao, Jolien Vanhooren, Charlotte Derpoorter, Barbara De Moerloose, and Tim Lammens. 2024. “A 69 Long Noncoding RNA Signature Predicts Relapse and Acts as Independent Prognostic Factor in Pediatric AML.” BLOOD ADVANCES 8 (12): 3299–3310. https://doi.org/10.1182/bloodadvances.2024012667.
- Chicago author-date (all authors)
- Ren, Zhiyao, Jolien Vanhooren, Charlotte Derpoorter, Barbara De Moerloose, and Tim Lammens. 2024. “A 69 Long Noncoding RNA Signature Predicts Relapse and Acts as Independent Prognostic Factor in Pediatric AML.” BLOOD ADVANCES 8 (12): 3299–3310. doi:10.1182/bloodadvances.2024012667.
- Vancouver
- 1.Ren Z, Vanhooren J, Derpoorter C, De Moerloose B, Lammens T. A 69 long noncoding RNA signature predicts relapse and acts as independent prognostic factor in pediatric AML. BLOOD ADVANCES. 2024;8(12):3299–310.
- IEEE
- [1]Z. Ren, J. Vanhooren, C. Derpoorter, B. De Moerloose, and T. Lammens, “A 69 long noncoding RNA signature predicts relapse and acts as independent prognostic factor in pediatric AML,” BLOOD ADVANCES, vol. 8, no. 12, pp. 3299–3310, 2024.
@article{01HW86Z3F86C89EQYXVDWMV9WG, abstract = {{Risk stratification using genetics and minimal residual disease (MRD) has allowed to increase the cure rates of pediatric acute myeloid leukemia (pedAML) up to 70% in contemporary protocols. Nevertheless, approximately 30% of patients still experience relapse, indicating a need to optimize stratification strategies. Recently, long non-coding RNA (lncRNA) expression has been shown to hold prognostic power in multiple cancer types. Here, we aimed at refining relapse prediction in pedAML using lncRNA expression. We built a relapse-related lncRNA prognostic signature, named AMLlnc69, using 871 pedAML patients transcriptomes obtained from the Therapeutically Applicable Research To Generate Effective Treatments (TARGET) repository. We identified a 69 lncRNA signature AMLlnc69 that is highly predictive of relapse-risk (c-index = 0.73), with area under the ROC curve (AUC) values for predicting the 1-, 2-, and 3-year relapse-free survival (RFS) of 0.78, 0.77, and 0.77, respectively. The internal validation using a bootstrap method (resampling times = 1000) resulted in a c-index of 0.72 and AUC values for predicting the 1-, 2-, and 3-year RFS of 0.77, 0.76, and 0.76, respectively. Through a Cox regression analysis, AMLlnc69, NPM mutation and WBC at diagnosis were identified as independent predictors of RFS. Finally, a nomogram was build using these two parameters, showing a c-index of 0.80 and 0.71 after bootstrapping (n =1000). In conclusion, the identified AMLlnc69 will, after prospective validation, add important information to guide management of pedAML patients. The nomogram is a promising tool for easy stratification of patients into a novel scheme of relapse-risk groups.}}, author = {{Ren, Zhiyao and Vanhooren, Jolien and Derpoorter, Charlotte and De Moerloose, Barbara and Lammens, Tim}}, issn = {{2473-9529}}, journal = {{BLOOD ADVANCES}}, keywords = {{ACUTE MYELOID-LEUKEMIA,FLOW-CYTOMETRY,EXPRESSION,ONCOLOGY,RESISTANCE,CHILDHOOD,CHILDREN,SURVIVAL,MODELS,RISK}}, language = {{eng}}, number = {{12}}, pages = {{3299--3310}}, title = {{A 69 long noncoding RNA signature predicts relapse and acts as independent prognostic factor in pediatric AML}}, url = {{http://doi.org/10.1182/bloodadvances.2024012667}}, volume = {{8}}, year = {{2024}}, }
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