
Towards uncovering the role of incomplete penetrance in maculopathies through sequencing of 105 disease-associated genes
- Author
- Rebekkah J. Hitti-Malin, Daan M. Panneman, Zelia Corradi, Erica G. M. Boonen, Galuh Astuti, Claire-Marie Dhaenens, Heidi Stoehr, Bernhard H. F. Weber, Dror Sharon, Eyal Banin, Marianthi Karali, Sandro Banfi, Tamar Ben-Yosef, Damjan Glavac, G. Jane Farrar, Carmen Ayuso, Petra Liskova, Lubica Dudakova, Marie Vajter, Monika Oldak, Jacek P. Szaflik, Anna Matynia, Michael B. Gorin, Kati Kaempjaervi, Miriam Bauwens, Elfride De Baere (UGent) , Carel B. Hoyng, Catherina H. Z. Li, Caroline C. W. Klaver, Chris F. Inglehearn, Kaoru Fujinami, Carlo Rivolta, Rando Allikmets, Jana Zernant, Winston Lee, Osvaldo L. Podhajcer, Ana Fakin, Jana Sajovic, Alaa Altalbishi, Sandra Valeina, Gita Taurina, Andrea L. Vincent, Lisa Roberts, Raj Ramesar, Giovanna Sartor, Elena Luppi, Susan M. Downes, L. Ingeborgh van den Born, Terri L. Mclaren, John N. De Roach, Tina M. Lamey, Jennifer A. Thompson, Fred K. Chen, Anna M. Tracewska, Smaragda Kamakari, Juliana Maria Ferraz Sallum, Hanno J. Bolz, Huelya Kayserili, Susanne Roosing and Frans P. M. Cremers
- Organization
- Abstract
- Inherited macular dystrophies (iMDs) are a group of genetic disorders, which affect the central region of the retina. To investigate the genetic basis of iMDs, we used single-molecule Molecular Inversion Probes to sequence 105 maculopathy-associated genes in 1352 patients diagnosed with iMDs. Within this cohort, 39.8% of patients were considered genetically explained by 460 different variants in 49 distinct genes of which 73 were novel variants, with some affecting splicing. The top five most frequent causative genes were ABCA4 (37.2%), PRPH2 (6.7%), CDHR1 (6.1%), PROM1 (4.3%) and RP1L1 (3.1%). Interestingly, variants with incomplete penetrance were revealed in almost one-third of patients considered solved (28.1%), and therefore, a proportion of patients may not be explained solely by the variants reported. This includes eight previously reported variants with incomplete penetrance in addition to CDHR1:c.783G>A and CNGB3:c.1208G>A. Notably, segregation analysis was not routinely performed for variant phasing-a limitation, which may also impact the overall diagnostic yield. The relatively high proportion of probands without any putative causal variant (60.2%) highlights the need to explore variants with incomplete penetrance, the potential modifiers of disease and the genetic overlap between iMDs and age-related macular degeneration. Our results provide valuable insights into the genetic landscape of iMDs and warrant future exploration to determine the involvement of other maculopathy genes.
- Keywords
- maculopathies, macula, retinal, inherited, sequencing, penetrance, TRANSFER RNALEU(UUR) GENE, MACULAR DEGENERATION, STARGARDT DISEASE, RETINITIS-PIGMENTOSA, MOLECULAR-GENETICS, CLINICAL-FEATURES, RP1L1 VARIANTS, ABCA4, MUTATION, DYSTROPHY
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01HTY934S0SF4CA361TTWQKKKT
- MLA
- Hitti-Malin, Rebekkah J., et al. “Towards Uncovering the Role of Incomplete Penetrance in Maculopathies through Sequencing of 105 Disease-Associated Genes.” BIOMOLECULES, vol. 14, no. 3, 2024, doi:10.3390/biom14030367.
- APA
- Hitti-Malin, R. J., Panneman, D. M., Corradi, Z., Boonen, E. G. M., Astuti, G., Dhaenens, C.-M., … Cremers, F. P. M. (2024). Towards uncovering the role of incomplete penetrance in maculopathies through sequencing of 105 disease-associated genes. BIOMOLECULES, 14(3). https://doi.org/10.3390/biom14030367
- Chicago author-date
- Hitti-Malin, Rebekkah J., Daan M. Panneman, Zelia Corradi, Erica G. M. Boonen, Galuh Astuti, Claire-Marie Dhaenens, Heidi Stoehr, et al. 2024. “Towards Uncovering the Role of Incomplete Penetrance in Maculopathies through Sequencing of 105 Disease-Associated Genes.” BIOMOLECULES 14 (3). https://doi.org/10.3390/biom14030367.
- Chicago author-date (all authors)
- Hitti-Malin, Rebekkah J., Daan M. Panneman, Zelia Corradi, Erica G. M. Boonen, Galuh Astuti, Claire-Marie Dhaenens, Heidi Stoehr, Bernhard H. F. Weber, Dror Sharon, Eyal Banin, Marianthi Karali, Sandro Banfi, Tamar Ben-Yosef, Damjan Glavac, G. Jane Farrar, Carmen Ayuso, Petra Liskova, Lubica Dudakova, Marie Vajter, Monika Oldak, Jacek P. Szaflik, Anna Matynia, Michael B. Gorin, Kati Kaempjaervi, Miriam Bauwens, Elfride De Baere, Carel B. Hoyng, Catherina H. Z. Li, Caroline C. W. Klaver, Chris F. Inglehearn, Kaoru Fujinami, Carlo Rivolta, Rando Allikmets, Jana Zernant, Winston Lee, Osvaldo L. Podhajcer, Ana Fakin, Jana Sajovic, Alaa Altalbishi, Sandra Valeina, Gita Taurina, Andrea L. Vincent, Lisa Roberts, Raj Ramesar, Giovanna Sartor, Elena Luppi, Susan M. Downes, L. Ingeborgh van den Born, Terri L. Mclaren, John N. De Roach, Tina M. Lamey, Jennifer A. Thompson, Fred K. Chen, Anna M. Tracewska, Smaragda Kamakari, Juliana Maria Ferraz Sallum, Hanno J. Bolz, Huelya Kayserili, Susanne Roosing, and Frans P. M. Cremers. 2024. “Towards Uncovering the Role of Incomplete Penetrance in Maculopathies through Sequencing of 105 Disease-Associated Genes.” BIOMOLECULES 14 (3). doi:10.3390/biom14030367.
- Vancouver
- 1.Hitti-Malin RJ, Panneman DM, Corradi Z, Boonen EGM, Astuti G, Dhaenens C-M, et al. Towards uncovering the role of incomplete penetrance in maculopathies through sequencing of 105 disease-associated genes. BIOMOLECULES. 2024;14(3).
- IEEE
- [1]R. J. Hitti-Malin et al., “Towards uncovering the role of incomplete penetrance in maculopathies through sequencing of 105 disease-associated genes,” BIOMOLECULES, vol. 14, no. 3, 2024.
@article{01HTY934S0SF4CA361TTWQKKKT, abstract = {{Inherited macular dystrophies (iMDs) are a group of genetic disorders, which affect the central region of the retina. To investigate the genetic basis of iMDs, we used single-molecule Molecular Inversion Probes to sequence 105 maculopathy-associated genes in 1352 patients diagnosed with iMDs. Within this cohort, 39.8% of patients were considered genetically explained by 460 different variants in 49 distinct genes of which 73 were novel variants, with some affecting splicing. The top five most frequent causative genes were ABCA4 (37.2%), PRPH2 (6.7%), CDHR1 (6.1%), PROM1 (4.3%) and RP1L1 (3.1%). Interestingly, variants with incomplete penetrance were revealed in almost one-third of patients considered solved (28.1%), and therefore, a proportion of patients may not be explained solely by the variants reported. This includes eight previously reported variants with incomplete penetrance in addition to CDHR1:c.783G>A and CNGB3:c.1208G>A. Notably, segregation analysis was not routinely performed for variant phasing-a limitation, which may also impact the overall diagnostic yield. The relatively high proportion of probands without any putative causal variant (60.2%) highlights the need to explore variants with incomplete penetrance, the potential modifiers of disease and the genetic overlap between iMDs and age-related macular degeneration. Our results provide valuable insights into the genetic landscape of iMDs and warrant future exploration to determine the involvement of other maculopathy genes.}}, articleno = {{367}}, author = {{Hitti-Malin, Rebekkah J. and Panneman, Daan M. and Corradi, Zelia and Boonen, Erica G. M. and Astuti, Galuh and Dhaenens, Claire-Marie and Stoehr, Heidi and Weber, Bernhard H. F. and Sharon, Dror and Banin, Eyal and Karali, Marianthi and Banfi, Sandro and Ben-Yosef, Tamar and Glavac, Damjan and Farrar, G. Jane and Ayuso, Carmen and Liskova, Petra and Dudakova, Lubica and Vajter, Marie and Oldak, Monika and Szaflik, Jacek P. and Matynia, Anna and Gorin, Michael B. and Kaempjaervi, Kati and Bauwens, Miriam and De Baere, Elfride and Hoyng, Carel B. and Li, Catherina H. Z. and Klaver, Caroline C. W. and Inglehearn, Chris F. and Fujinami, Kaoru and Rivolta, Carlo and Allikmets, Rando and Zernant, Jana and Lee, Winston and Podhajcer, Osvaldo L. and Fakin, Ana and Sajovic, Jana and Altalbishi, Alaa and Valeina, Sandra and Taurina, Gita and Vincent, Andrea L. and Roberts, Lisa and Ramesar, Raj and Sartor, Giovanna and Luppi, Elena and Downes, Susan M. and van den Born, L. Ingeborgh and Mclaren, Terri L. and De Roach, John N. and Lamey, Tina M. and Thompson, Jennifer A. and Chen, Fred K. and Tracewska, Anna M. and Kamakari, Smaragda and Sallum, Juliana Maria Ferraz and Bolz, Hanno J. and Kayserili, Huelya and Roosing, Susanne and Cremers, Frans P. M.}}, issn = {{2218-273X}}, journal = {{BIOMOLECULES}}, keywords = {{maculopathies,macula,retinal,inherited,sequencing,penetrance,TRANSFER RNALEU(UUR) GENE,MACULAR DEGENERATION,STARGARDT DISEASE,RETINITIS-PIGMENTOSA,MOLECULAR-GENETICS,CLINICAL-FEATURES,RP1L1 VARIANTS,ABCA4,MUTATION,DYSTROPHY}}, language = {{eng}}, number = {{3}}, pages = {{20}}, title = {{Towards uncovering the role of incomplete penetrance in maculopathies through sequencing of 105 disease-associated genes}}, url = {{http://doi.org/10.3390/biom14030367}}, volume = {{14}}, year = {{2024}}, }
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