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Identification of potentially actionable genetic variants in epithelial ovarian cancer : a retrospective cohort study

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Abstract
Ovarian cancer is the most lethal gynecologic malignancy, mainly due to late-stage diagnosis, frequent recurrences, and eventually therapy resistance. To identify potentially actionable genetic variants, sequencing data of 351 Belgian ovarian cancer patients were retrospectively captured from electronic health records. The cohort included 286 (81%) patients with high-grade serous ovarian cancer, 17 (5%) with low-grade serous ovarian cancer, and 48 (14%) with other histotypes. Firstly, an overview of the prevalence and spectrum of the BRCA1/2 variants highlighted germline variants in 4% (11/250) and somatic variants in 11% (37/348) of patients. Secondly, application of a multi-gene panel in 168 tumors revealed a total of 214 variants in 28 genes beyond BRCA1/2 with a median of 1 (IQR, 1-2) genetic variant per patient. The ten most often altered genes were (in descending order): TP53, BRCA1, PIK3CA, BRCA2, KRAS, ERBB2 (HER2), TERT promotor, RB1, PIK3R1 and PTEN. Of note, the genetic landscape vastly differed between the studied histotypes. Finally, using ESCAT the clinical evidence of utility for every genetic variant was scored. Only BRCA1/2 pathogenic variants were classified as tier-I. Nearly all patients (151/168; 90%) had an ESCAT tier-II variant, most frequently in TP53 (74%), PIK3CA (9%) and KRAS (7%). In conclusion, our findings imply that although only a small proportion of genetic variants currently have direct impact on ovarian cancer treatment decisions, other variants could help to identify novel (personalized) treatment options to address the poor prognosis of ovarian cancer, particularly in rare histotypes.

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MLA
Fieuws, Charlotte, et al. “Identification of Potentially Actionable Genetic Variants in Epithelial Ovarian Cancer : A Retrospective Cohort Study.” NPJ PRECISION ONCOLOGY, vol. 8, no. 1, 2024, doi:10.1038/s41698-024-00565-2.
APA
Fieuws, C., Van der Meulen, J., Proesmans, K., De Jaeghere, E., Loontiens, S., Van Dorpe, J., … Claes, K. (2024). Identification of potentially actionable genetic variants in epithelial ovarian cancer : a retrospective cohort study. NPJ PRECISION ONCOLOGY, 8(1). https://doi.org/10.1038/s41698-024-00565-2
Chicago author-date
Fieuws, Charlotte, Joni Van der Meulen, Kristiaan Proesmans, Emiel De Jaeghere, Siebe Loontiens, Jo Van Dorpe, Philippe Tummers, Hannelore Denys, Koen Van de Vijver, and Kathleen Claes. 2024. “Identification of Potentially Actionable Genetic Variants in Epithelial Ovarian Cancer : A Retrospective Cohort Study.” NPJ PRECISION ONCOLOGY 8 (1). https://doi.org/10.1038/s41698-024-00565-2.
Chicago author-date (all authors)
Fieuws, Charlotte, Joni Van der Meulen, Kristiaan Proesmans, Emiel De Jaeghere, Siebe Loontiens, Jo Van Dorpe, Philippe Tummers, Hannelore Denys, Koen Van de Vijver, and Kathleen Claes. 2024. “Identification of Potentially Actionable Genetic Variants in Epithelial Ovarian Cancer : A Retrospective Cohort Study.” NPJ PRECISION ONCOLOGY 8 (1). doi:10.1038/s41698-024-00565-2.
Vancouver
1.
Fieuws C, Van der Meulen J, Proesmans K, De Jaeghere E, Loontiens S, Van Dorpe J, et al. Identification of potentially actionable genetic variants in epithelial ovarian cancer : a retrospective cohort study. NPJ PRECISION ONCOLOGY. 2024;8(1).
IEEE
[1]
C. Fieuws et al., “Identification of potentially actionable genetic variants in epithelial ovarian cancer : a retrospective cohort study,” NPJ PRECISION ONCOLOGY, vol. 8, no. 1, 2024.
@article{01HSZQT8EM3ZX6B0QZR00HY5A5,
  abstract     = {{Ovarian cancer is the most lethal gynecologic malignancy, mainly due to late-stage diagnosis, frequent recurrences, and eventually therapy resistance. To identify potentially actionable genetic variants, sequencing data of 351 Belgian ovarian cancer patients were retrospectively captured from electronic health records. The cohort included 286 (81%) patients with high-grade serous ovarian cancer, 17 (5%) with low-grade serous ovarian cancer, and 48 (14%) with other histotypes. Firstly, an overview of the prevalence and spectrum of the BRCA1/2 variants highlighted germline variants in 4% (11/250) and somatic variants in 11% (37/348) of patients. Secondly, application of a multi-gene panel in 168 tumors revealed a total of 214 variants in 28 genes beyond BRCA1/2 with a median of 1 (IQR, 1-2) genetic variant per patient. The ten most often altered genes were (in descending order): TP53, BRCA1, PIK3CA, BRCA2, KRAS, ERBB2 (HER2), TERT promotor, RB1, PIK3R1 and PTEN. Of note, the genetic landscape vastly differed between the studied histotypes. Finally, using ESCAT the clinical evidence of utility for every genetic variant was scored. Only BRCA1/2 pathogenic variants were classified as tier-I. Nearly all patients (151/168; 90%) had an ESCAT tier-II variant, most frequently in TP53 (74%), PIK3CA (9%) and KRAS (7%). In conclusion, our findings imply that although only a small proportion of genetic variants currently have direct impact on ovarian cancer treatment decisions, other variants could help to identify novel (personalized) treatment options to address the poor prognosis of ovarian cancer, particularly in rare histotypes.}},
  articleno    = {{71}},
  author       = {{Fieuws, Charlotte and Van der Meulen, Joni and Proesmans, Kristiaan and De Jaeghere, Emiel and Loontiens, Siebe and Van Dorpe, Jo and Tummers, Philippe and Denys, Hannelore and Van de Vijver, Koen and Claes, Kathleen}},
  issn         = {{2397-768X}},
  journal      = {{NPJ PRECISION ONCOLOGY}},
  language     = {{eng}},
  number       = {{1}},
  pages        = {{9}},
  title        = {{Identification of potentially actionable genetic variants in epithelial ovarian cancer : a retrospective cohort study}},
  url          = {{http://doi.org/10.1038/s41698-024-00565-2}},
  volume       = {{8}},
  year         = {{2024}},
}

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