A protocol for a turbidimetric assay using a Saccharomyces cerevisiae thiamin biosynthesis mutant to estimate total vitamin B1 content in plant tissue samples
- Author
- Simon Strobbe (UGent) , Jana Verstraete, Teresa B. Fitzpatrick, Christophe Stove (UGent) and Dominique Van Der Straeten (UGent)
- Organization
- Project
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- Folate stability in rice: a molecular and analytical study
- Thiamin transport in plants
- Refining folate metabolism in plants: identification and functional characterization of folate binding proteins and transporters
- A key role of bio-analysis in guiding thiamine biofortification and thiamine biomonitoring 'in the field'.
- Towards eradication of vitamin deficiencies by metabolic engineering of rice
- Abstract
- Background: Understanding thiamin (thiamine; vitamin B1) metabolism in plants is crucial, as it impacts plant nutritional value as well as stress tolerance. Studies aimed at elucidating novel aspects of thiamin in plants rely on adequate assessment of thiamin content. Mass spectrometry-based methods provide reliable quantification of thiamin as well as closely related biomolecules. However, these techniques require expensive equipment and expertise. Microbiological turbidimetric assays can evaluate the presence of thiamin in a given sample, only requiring low-cost, standard lab equipment. Although these microbiological assays do not reach the accuracy provided by mass spectrometry-based methods, the ease with which they can be deployed in an inexpensive and high-throughput manner, makes them a favorable method in many circumstances. However, the thiamin research field could benefit from a detailed step-by-step protocol to perform such assays as well as a further assessment of its potential and limitations. Results: Here, we show that the Saccharomyces cerevisiae thiamin biosynthesis mutant thi6 is an ideal candidate to be implemented in a turbidimetric assay aimed at assessing the content of thiamin and its phosphorylated equivalents (total vitamer B1). An optimized protocol was generated, adapted from a previously established microbiological assay using the thi4 mutant. A step-by-step guidance for this protocol is presented. Furthermore, the applicability of the assay is illustrated by assessment of different samples, including plant as well as non-plant materials. In doing so, our work provides an extension of the applicability of the microbiological assay on top of providing important considerations upon implementing the protocol. Conclusions: An inexpensive, user-friendly protocol, including step-by-step guidance, which allows adequate estimation of vitamer B1 content of samples, is provided. The method is well-suited to screen materials to identify altered vitamer B1 content, such as in metabolic engineering or screening of germplasm.
- Keywords
- MICROBIOLOGICAL ASSAY, METABOLISM, BIOFORTIFICATION, DIVERSITY, STABILITY, IRON, Turbidimetry, Microbiological assay, Thiamine, Protocol, Vitamin quantification, Biofortification, Metabolic engineering, Nutritional value, Nutrition, Plant breeding
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01HNJ05X9BT6PBC5AE05CP85XX
- MLA
- Strobbe, Simon, et al. “A Protocol for a Turbidimetric Assay Using a Saccharomyces Cerevisiae Thiamin Biosynthesis Mutant to Estimate Total Vitamin B1 Content in Plant Tissue Samples.” PLANT METHODS, vol. 19, no. 1, 2023, doi:10.1186/s13007-023-01117-8.
- APA
- Strobbe, S., Verstraete, J., Fitzpatrick, T. B., Stove, C., & Van Der Straeten, D. (2023). A protocol for a turbidimetric assay using a Saccharomyces cerevisiae thiamin biosynthesis mutant to estimate total vitamin B1 content in plant tissue samples. PLANT METHODS, 19(1). https://doi.org/10.1186/s13007-023-01117-8
- Chicago author-date
- Strobbe, Simon, Jana Verstraete, Teresa B. Fitzpatrick, Christophe Stove, and Dominique Van Der Straeten. 2023. “A Protocol for a Turbidimetric Assay Using a Saccharomyces Cerevisiae Thiamin Biosynthesis Mutant to Estimate Total Vitamin B1 Content in Plant Tissue Samples.” PLANT METHODS 19 (1). https://doi.org/10.1186/s13007-023-01117-8.
- Chicago author-date (all authors)
- Strobbe, Simon, Jana Verstraete, Teresa B. Fitzpatrick, Christophe Stove, and Dominique Van Der Straeten. 2023. “A Protocol for a Turbidimetric Assay Using a Saccharomyces Cerevisiae Thiamin Biosynthesis Mutant to Estimate Total Vitamin B1 Content in Plant Tissue Samples.” PLANT METHODS 19 (1). doi:10.1186/s13007-023-01117-8.
- Vancouver
- 1.Strobbe S, Verstraete J, Fitzpatrick TB, Stove C, Van Der Straeten D. A protocol for a turbidimetric assay using a Saccharomyces cerevisiae thiamin biosynthesis mutant to estimate total vitamin B1 content in plant tissue samples. PLANT METHODS. 2023;19(1).
- IEEE
- [1]S. Strobbe, J. Verstraete, T. B. Fitzpatrick, C. Stove, and D. Van Der Straeten, “A protocol for a turbidimetric assay using a Saccharomyces cerevisiae thiamin biosynthesis mutant to estimate total vitamin B1 content in plant tissue samples,” PLANT METHODS, vol. 19, no. 1, 2023.
@article{01HNJ05X9BT6PBC5AE05CP85XX, abstract = {{Background: Understanding thiamin (thiamine; vitamin B1) metabolism in plants is crucial, as it impacts plant nutritional value as well as stress tolerance. Studies aimed at elucidating novel aspects of thiamin in plants rely on adequate assessment of thiamin content. Mass spectrometry-based methods provide reliable quantification of thiamin as well as closely related biomolecules. However, these techniques require expensive equipment and expertise. Microbiological turbidimetric assays can evaluate the presence of thiamin in a given sample, only requiring low-cost, standard lab equipment. Although these microbiological assays do not reach the accuracy provided by mass spectrometry-based methods, the ease with which they can be deployed in an inexpensive and high-throughput manner, makes them a favorable method in many circumstances. However, the thiamin research field could benefit from a detailed step-by-step protocol to perform such assays as well as a further assessment of its potential and limitations. Results: Here, we show that the Saccharomyces cerevisiae thiamin biosynthesis mutant thi6 is an ideal candidate to be implemented in a turbidimetric assay aimed at assessing the content of thiamin and its phosphorylated equivalents (total vitamer B1). An optimized protocol was generated, adapted from a previously established microbiological assay using the thi4 mutant. A step-by-step guidance for this protocol is presented. Furthermore, the applicability of the assay is illustrated by assessment of different samples, including plant as well as non-plant materials. In doing so, our work provides an extension of the applicability of the microbiological assay on top of providing important considerations upon implementing the protocol. Conclusions: An inexpensive, user-friendly protocol, including step-by-step guidance, which allows adequate estimation of vitamer B1 content of samples, is provided. The method is well-suited to screen materials to identify altered vitamer B1 content, such as in metabolic engineering or screening of germplasm.}}, articleno = {{144}}, author = {{Strobbe, Simon and Verstraete, Jana and Fitzpatrick, Teresa B. and Stove, Christophe and Van Der Straeten, Dominique}}, issn = {{1746-4811}}, journal = {{PLANT METHODS}}, keywords = {{MICROBIOLOGICAL ASSAY,METABOLISM,BIOFORTIFICATION,DIVERSITY,STABILITY,IRON,Turbidimetry,Microbiological assay,Thiamine,Protocol,Vitamin quantification,Biofortification,Metabolic engineering,Nutritional value,Nutrition,Plant breeding}}, language = {{eng}}, number = {{1}}, pages = {{14}}, title = {{A protocol for a turbidimetric assay using a Saccharomyces cerevisiae thiamin biosynthesis mutant to estimate total vitamin B1 content in plant tissue samples}}, url = {{http://doi.org/10.1186/s13007-023-01117-8}}, volume = {{19}}, year = {{2023}}, }
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