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A signal‐to‐noise‐ratio‐based automated algorithm to accelerate kinetic Monte Carlo convergence in basic polymerizations

Alessandro Trigilio (UGent) , Yoshi Marien (UGent) , Kyann De Smit (UGent) , Paul Van Steenberge (UGent) and Dagmar D'hooge (UGent)
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Abstract
Kinetic Monte Carlo (kMC) modelling is ubiquitous to simulate the time evolution of (bio)chemical processes, specifically if populations are involved. A recurring task is the selection of the smallest control volume that leads to convergence, which means that the model outputs are accurate and sufficiently free from stochastic noise and do not significantly change upon further increasing this volume. Selecting a too high (safe) control volume leads to an excessive simulation time, while many small incremental control volume increases are inefficient. This work therefore presents an automated tool to determine the smallest control volume leading to convergence. The tool is illustrated for (intrinsic) free radical and nitroxide mediated polymerization (FRP/NMP), in which the chain length distribution (CLD) is a crucial output. The algorithm starts with a very low volume to then check if the desired (monomer) conversion can be reached, the number average chain length is accurate, and finally the signal-to-noise (SNR) ratio at the CLD level is below a threshold. The execution time of the algorithm is less than twice the time of running the converged simulation directly, hence, saving tremendous time in setting up a kMC simulation and facilitating benchmark studies even beyond polymer reaction engineering applications. A signal-to-noise ratio (SNR) based method to find the control volume that guarantees converged results for kinetic Monte Carlo (kMC) simulations is highlighted and applied in the field of polymer reaction engineering. The application of the algorithm employs less than twice the simulation time compared to the time needed to simulate with a converged volume.image
Keywords
Multidisciplinary, Modeling and Simulation, Numerical Analysis, Statistics and Probability, automation, convergence, Monte Carlo, polymerization, stochastic noise, FREE-RADICAL POLYMERIZATION, MOLECULAR-WEIGHT DISTRIBUTION, STOCHASTIC, SIMULATION, SIZE DISTRIBUTION, TIME EVOLUTION, CHAIN-LENGTH, MICROSTRUCTURE, COPOLYMERIZATION, ATRP, PERSPECTIVES

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MLA
Trigilio, Alessandro, et al. “A Signal‐to‐noise‐ratio‐based Automated Algorithm to Accelerate Kinetic Monte Carlo Convergence in Basic Polymerizations.” ADVANCED THEORY AND SIMULATIONS, vol. 7, no. 2, 2024, doi:10.1002/adts.202300637.
APA
Trigilio, A., Marien, Y., De Smit, K., Van Steenberge, P., & D’hooge, D. (2024). A signal‐to‐noise‐ratio‐based automated algorithm to accelerate kinetic Monte Carlo convergence in basic polymerizations. ADVANCED THEORY AND SIMULATIONS, 7(2). https://doi.org/10.1002/adts.202300637
Chicago author-date
Trigilio, Alessandro, Yoshi Marien, Kyann De Smit, Paul Van Steenberge, and Dagmar D’hooge. 2024. “A Signal‐to‐noise‐ratio‐based Automated Algorithm to Accelerate Kinetic Monte Carlo Convergence in Basic Polymerizations.” ADVANCED THEORY AND SIMULATIONS 7 (2). https://doi.org/10.1002/adts.202300637.
Chicago author-date (all authors)
Trigilio, Alessandro, Yoshi Marien, Kyann De Smit, Paul Van Steenberge, and Dagmar D’hooge. 2024. “A Signal‐to‐noise‐ratio‐based Automated Algorithm to Accelerate Kinetic Monte Carlo Convergence in Basic Polymerizations.” ADVANCED THEORY AND SIMULATIONS 7 (2). doi:10.1002/adts.202300637.
Vancouver
1.
Trigilio A, Marien Y, De Smit K, Van Steenberge P, D’hooge D. A signal‐to‐noise‐ratio‐based automated algorithm to accelerate kinetic Monte Carlo convergence in basic polymerizations. ADVANCED THEORY AND SIMULATIONS. 2024;7(2).
IEEE
[1]
A. Trigilio, Y. Marien, K. De Smit, P. Van Steenberge, and D. D’hooge, “A signal‐to‐noise‐ratio‐based automated algorithm to accelerate kinetic Monte Carlo convergence in basic polymerizations,” ADVANCED THEORY AND SIMULATIONS, vol. 7, no. 2, 2024.
@article{01HN2ZZ5RYNBWVHM44DVAF8G1S,
  abstract     = {{Kinetic Monte Carlo (kMC) modelling is ubiquitous to simulate the time evolution of (bio)chemical processes, specifically if populations are involved. A recurring task is the selection of the smallest control volume that leads to convergence, which means that the model outputs are accurate and sufficiently free from stochastic noise and do not significantly change upon further increasing this volume. Selecting a too high (safe) control volume leads to an excessive simulation time, while many small incremental control volume increases are inefficient. This work therefore presents an automated tool to determine the smallest control volume leading to convergence. The tool is illustrated for (intrinsic) free radical and nitroxide mediated polymerization (FRP/NMP), in which the chain length distribution (CLD) is a crucial output. The algorithm starts with a very low volume to then check if the desired (monomer) conversion can be reached, the number average chain length is accurate, and finally the signal-to-noise (SNR) ratio at the CLD level is below a threshold. The execution time of the algorithm is less than twice the time of running the converged simulation directly, hence, saving tremendous time in setting up a kMC simulation and facilitating benchmark studies even beyond polymer reaction engineering applications.

A signal-to-noise ratio (SNR) based method to find the control volume that guarantees converged results for kinetic Monte Carlo (kMC) simulations is highlighted and applied in the field of polymer reaction engineering. The application of the algorithm employs less than twice the simulation time compared to the time needed to simulate with a converged volume.image}},
  articleno    = {{2300637}},
  author       = {{Trigilio, Alessandro and Marien, Yoshi and De Smit, Kyann and Van Steenberge, Paul and D'hooge, Dagmar}},
  issn         = {{2513-0390}},
  journal      = {{ADVANCED THEORY AND SIMULATIONS}},
  keywords     = {{Multidisciplinary,Modeling and Simulation,Numerical Analysis,Statistics and Probability,automation,convergence,Monte Carlo,polymerization,stochastic noise,FREE-RADICAL POLYMERIZATION,MOLECULAR-WEIGHT DISTRIBUTION,STOCHASTIC,SIMULATION,SIZE DISTRIBUTION,TIME EVOLUTION,CHAIN-LENGTH,MICROSTRUCTURE,COPOLYMERIZATION,ATRP,PERSPECTIVES}},
  language     = {{eng}},
  number       = {{2}},
  pages        = {{16}},
  title        = {{A signal‐to‐noise‐ratio‐based automated algorithm to accelerate kinetic Monte Carlo convergence in basic polymerizations}},
  url          = {{http://doi.org/10.1002/adts.202300637}},
  volume       = {{7}},
  year         = {{2024}},
}

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