
How to verify the precision of density-functional-theory implementations via reproducible and universal workflows
- Author
- Emanuele Bosoni, Louis Beal, Marnik Bercx, Peter Blaha, Stefan Bluegel, Jens Broeder, Martin Callsen (UGent) , Stefaan Cottenier (UGent) , Augustin Degomme, Vladimir Dikan, Kristjan Eimre, Espen Flage-Larsen, Marco Fornari, Alberto Garcia, Luigi Genovese, Matteo Giantomassi, Sebastiaan P. Huber, Henning Janssen, Georg Kastlunger, Matthias Krack, Georg Kresse, Thomas D. Kuehne, Kurt Lejaeghere (UGent) , Georg K. H. Madsen, Martijn Marsman, Nicola Marzari, Gregor Michalicek, Hossein Mirhosseini, Tiziano M. A. Mueller, Guido Petretto, Chris J. Pickard, Samuel Ponce, Gian-Marco Rignanese, Oleg Rubel, Thomas Ruh (UGent) , Michael Sluydts (UGent) , Danny Vanpoucke (UGent) , Sudarshan Vijay, Michael Wolloch, Daniel Wortmann, Aliaksandr V. Yakutovich, Jusong Yu, Austin Zadoks, Bonan Zhu and Giovanni Pizzi
- Organization
- Abstract
- Density-functional theory methods and codes adopting periodic boundary conditions are extensively used in condensed matter physics and materials science research. In 2016, their precision (how well properties computed with different codes agree among each other) was systematically assessed on elemental crystals: a first crucial step to evaluate the reliability of such computations. In this Expert Recommendation, we discuss recommendations for verification studies aiming at further testing precision and transferability of density-functional-theory computational approaches and codes. We illustrate such recommendations using a greatly expanded protocol covering the whole periodic table from Z = 1 to 96 and characterizing 10 prototypical cubic compounds for each element: four unaries and six oxides, spanning a wide range of coordination numbers and oxidation states. The primary outcome is a reference dataset of 960 equations of state cross-checked between two all-electron codes, then used to verify and improve nine pseudopotential-based approaches. Finally, we discuss the extent to which the current results for total energies can be reused for different goals. Verification efforts of density-functional theory (DFT) calculations are of crucial importance to evaluate the reliability of simulation results. In this Expert Recommendation, we suggest metrics for DFT verification, illustrating them with an all-electron reference dataset of 960 equations of state covering the whole periodic table (hydrogen to curium) and discuss the importance of improving pseudopotential codes. Verification efforts are critical to assess the reliability of density-functional theory (DFT) simulations and provide results with properly quantified uncertainties.Developing standard computation protocols to perform verification studies and publishing curated and FAIR reference datasets can greatly aid their use to improve codes and computational approaches.The use of fully automated workflows with common interfaces between codes can guarantee uniformity, transferability and reproducibility of results.A careful description of the numerical and methodological details needed to compare with the reference datasets is essential; we discuss and illustrate this point with a dataset of 960 all-electron equations of state.Reference datasets should always include an explanation of the target property for which they were generated, and a discussion of their limits of applicability.Further extensions of DFT verification efforts are needed to cover more functionals, more computational approaches and the treatment of magnetic and relativistic (spin-orbit) effects. They should also aim at concurrently delivering optimized protocols that not only target ultimate precision, but also optimize the computational cost for a target accuracy.
- Keywords
- EXTENDING HIRSHFELD-I, PSEUDOPOTENTIALS, INTERFACE, LIBRARY, ABINIT, ENERGY, TABLE, BULK
Downloads
-
(...).pdf
- full text (Accepted manuscript)
- |
- UGent only
- |
- |
- 10.11 MB
Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01HN0C1FG3DY1C0QA61J05DPWC
- MLA
- Bosoni, Emanuele, et al. “How to Verify the Precision of Density-Functional-Theory Implementations via Reproducible and Universal Workflows.” NATURE REVIEWS PHYSICS, vol. 6, 2024, pp. 45–58, doi:10.1038/s42254-023-00655-3.
- APA
- Bosoni, E., Beal, L., Bercx, M., Blaha, P., Bluegel, S., Broeder, J., … Pizzi, G. (2024). How to verify the precision of density-functional-theory implementations via reproducible and universal workflows. NATURE REVIEWS PHYSICS, 6, 45–58. https://doi.org/10.1038/s42254-023-00655-3
- Chicago author-date
- Bosoni, Emanuele, Louis Beal, Marnik Bercx, Peter Blaha, Stefan Bluegel, Jens Broeder, Martin Callsen, et al. 2024. “How to Verify the Precision of Density-Functional-Theory Implementations via Reproducible and Universal Workflows.” NATURE REVIEWS PHYSICS 6: 45–58. https://doi.org/10.1038/s42254-023-00655-3.
- Chicago author-date (all authors)
- Bosoni, Emanuele, Louis Beal, Marnik Bercx, Peter Blaha, Stefan Bluegel, Jens Broeder, Martin Callsen, Stefaan Cottenier, Augustin Degomme, Vladimir Dikan, Kristjan Eimre, Espen Flage-Larsen, Marco Fornari, Alberto Garcia, Luigi Genovese, Matteo Giantomassi, Sebastiaan P. Huber, Henning Janssen, Georg Kastlunger, Matthias Krack, Georg Kresse, Thomas D. Kuehne, Kurt Lejaeghere, Georg K. H. Madsen, Martijn Marsman, Nicola Marzari, Gregor Michalicek, Hossein Mirhosseini, Tiziano M. A. Mueller, Guido Petretto, Chris J. Pickard, Samuel Ponce, Gian-Marco Rignanese, Oleg Rubel, Thomas Ruh, Michael Sluydts, Danny Vanpoucke, Sudarshan Vijay, Michael Wolloch, Daniel Wortmann, Aliaksandr V. Yakutovich, Jusong Yu, Austin Zadoks, Bonan Zhu, and Giovanni Pizzi. 2024. “How to Verify the Precision of Density-Functional-Theory Implementations via Reproducible and Universal Workflows.” NATURE REVIEWS PHYSICS 6: 45–58. doi:10.1038/s42254-023-00655-3.
- Vancouver
- 1.Bosoni E, Beal L, Bercx M, Blaha P, Bluegel S, Broeder J, et al. How to verify the precision of density-functional-theory implementations via reproducible and universal workflows. NATURE REVIEWS PHYSICS. 2024;6:45–58.
- IEEE
- [1]E. Bosoni et al., “How to verify the precision of density-functional-theory implementations via reproducible and universal workflows,” NATURE REVIEWS PHYSICS, vol. 6, pp. 45–58, 2024.
@article{01HN0C1FG3DY1C0QA61J05DPWC, abstract = {{Density-functional theory methods and codes adopting periodic boundary conditions are extensively used in condensed matter physics and materials science research. In 2016, their precision (how well properties computed with different codes agree among each other) was systematically assessed on elemental crystals: a first crucial step to evaluate the reliability of such computations. In this Expert Recommendation, we discuss recommendations for verification studies aiming at further testing precision and transferability of density-functional-theory computational approaches and codes. We illustrate such recommendations using a greatly expanded protocol covering the whole periodic table from Z = 1 to 96 and characterizing 10 prototypical cubic compounds for each element: four unaries and six oxides, spanning a wide range of coordination numbers and oxidation states. The primary outcome is a reference dataset of 960 equations of state cross-checked between two all-electron codes, then used to verify and improve nine pseudopotential-based approaches. Finally, we discuss the extent to which the current results for total energies can be reused for different goals. Verification efforts of density-functional theory (DFT) calculations are of crucial importance to evaluate the reliability of simulation results. In this Expert Recommendation, we suggest metrics for DFT verification, illustrating them with an all-electron reference dataset of 960 equations of state covering the whole periodic table (hydrogen to curium) and discuss the importance of improving pseudopotential codes. Verification efforts are critical to assess the reliability of density-functional theory (DFT) simulations and provide results with properly quantified uncertainties.Developing standard computation protocols to perform verification studies and publishing curated and FAIR reference datasets can greatly aid their use to improve codes and computational approaches.The use of fully automated workflows with common interfaces between codes can guarantee uniformity, transferability and reproducibility of results.A careful description of the numerical and methodological details needed to compare with the reference datasets is essential; we discuss and illustrate this point with a dataset of 960 all-electron equations of state.Reference datasets should always include an explanation of the target property for which they were generated, and a discussion of their limits of applicability.Further extensions of DFT verification efforts are needed to cover more functionals, more computational approaches and the treatment of magnetic and relativistic (spin-orbit) effects. They should also aim at concurrently delivering optimized protocols that not only target ultimate precision, but also optimize the computational cost for a target accuracy.}}, author = {{Bosoni, Emanuele and Beal, Louis and Bercx, Marnik and Blaha, Peter and Bluegel, Stefan and Broeder, Jens and Callsen, Martin and Cottenier, Stefaan and Degomme, Augustin and Dikan, Vladimir and Eimre, Kristjan and Flage-Larsen, Espen and Fornari, Marco and Garcia, Alberto and Genovese, Luigi and Giantomassi, Matteo and Huber, Sebastiaan P. and Janssen, Henning and Kastlunger, Georg and Krack, Matthias and Kresse, Georg and Kuehne, Thomas D. and Lejaeghere, Kurt and Madsen, Georg K. H. and Marsman, Martijn and Marzari, Nicola and Michalicek, Gregor and Mirhosseini, Hossein and Mueller, Tiziano M. A. and Petretto, Guido and Pickard, Chris J. and Ponce, Samuel and Rignanese, Gian-Marco and Rubel, Oleg and Ruh, Thomas and Sluydts, Michael and Vanpoucke, Danny and Vijay, Sudarshan and Wolloch, Michael and Wortmann, Daniel and Yakutovich, Aliaksandr V. and Yu, Jusong and Zadoks, Austin and Zhu, Bonan and Pizzi, Giovanni}}, issn = {{2522-5820}}, journal = {{NATURE REVIEWS PHYSICS}}, keywords = {{EXTENDING HIRSHFELD-I,PSEUDOPOTENTIALS,INTERFACE,LIBRARY,ABINIT,ENERGY,TABLE,BULK}}, language = {{eng}}, pages = {{45--58}}, title = {{How to verify the precision of density-functional-theory implementations via reproducible and universal workflows}}, url = {{http://doi.org/10.1038/s42254-023-00655-3}}, volume = {{6}}, year = {{2024}}, }
- Altmetric
- View in Altmetric
- Web of Science
- Times cited: