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Distinct mode of action of a highly stable, engineered phage lysin killing Gram-negative bacteria

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Abstract
Therapeutic options to treat bacterial infections caused by Gram-negative pathogens are limited due to the spread of multidrug resistance. Protein engineering of phage-derived lysins can play a key role in the search for new antimicrobial compounds targeting Gram-negative pathogens. A previous high-throughput screen of a combinatorial lysin library identified lysin 1D10 active against Acinetobacter baumannii under elevated human serum concentrations. The engineered lysin consists of four modules: cecropin A, a linker, cell wall-binding domain, and an enzymatic active domain. Using time-lapse microscopy, we show that 1D10 has a distinct antibacterial mode of action resulting in local cell wall bulging at the septum instead of cell-wide lysis, as observed for previously reported engineered lysins that target Gram-negative bacteria. Our results indicate that the activity of 1D10 relies on the antibacterial activity of both cecropin A (CecA) and the enzymatically active domain. Based on a truncation analysis, the role of each of the four modules of 1D10 was dissected. We further compared the antibacterial spectrum, thermostability, and cytotoxicity of cecropin A alone and lysin 1D10. Both lysin 1D10 and CecA are most active against A. baumannii and are not cytotoxic toward human keratinocytes. Lysin 1D10 unfolds at 57 degrees C and has a remarkable refolding capacity, as it regains its activity even after exposure to 90 degrees C and sterilization conditions, whereas CecA is inactivated at 70 degrees C. Overall, the present study shows that an improved understanding of the killing mechanism and the protein properties will further support lysin engineering designs in the future. IMPORTANCE Engineered lysins are considered as highly promising alternatives for antibiotics. Our previous screening study using VersaTile technology identified 1D10 as a possible lead compound with activity against Acinetobacter baumannii strains under elevated human serum concentrations. In this manuscript, we reveal an unexpected mode of action and exceptional thermoresistance for lysin 1D10. Our findings shed new light on the development of engineered lysins, providing valuable insights for future research in this field.
Keywords
lysin, mode of action, Acinetobacter baumannii, serum, osmotic lysis, thermoresistance, ANTIBACTERIAL, RESISTANT, CECROPIN, ART-175

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MLA
Gerstmans, Hans, et al. “Distinct Mode of Action of a Highly Stable, Engineered Phage Lysin Killing Gram-Negative Bacteria.” MICROBIOLOGY SPECTRUM, vol. 11, no. 6, 2023, doi:10.1128/spectrum.01813-23.
APA
Gerstmans, H., Duyvejonck, L., Vázquez, R., Staes, I., Borloo, J., Abdelkader, K. A. S., … Briers, Y. (2023). Distinct mode of action of a highly stable, engineered phage lysin killing Gram-negative bacteria. MICROBIOLOGY SPECTRUM, 11(6). https://doi.org/10.1128/spectrum.01813-23
Chicago author-date
Gerstmans, Hans, Lisa Duyvejonck, Roberto Vázquez, Ines Staes, Jimmy Borloo, Karim Abdelkader Soufi Abdelkader, Jeroen Leroy, et al. 2023. “Distinct Mode of Action of a Highly Stable, Engineered Phage Lysin Killing Gram-Negative Bacteria.” MICROBIOLOGY SPECTRUM 11 (6). https://doi.org/10.1128/spectrum.01813-23.
Chicago author-date (all authors)
Gerstmans, Hans, Lisa Duyvejonck, Roberto Vázquez, Ines Staes, Jimmy Borloo, Karim Abdelkader Soufi Abdelkader, Jeroen Leroy, Emma Cremelie, Diana Gutierrez Fernandez, Héctor Tamés-Caunedo, Patricia Ruas-Madiedo, Ana Rodríguez, Abram Aertsen, Jeroen Lammertyn, Rob Lavigne, and Yves Briers. 2023. “Distinct Mode of Action of a Highly Stable, Engineered Phage Lysin Killing Gram-Negative Bacteria.” MICROBIOLOGY SPECTRUM 11 (6). doi:10.1128/spectrum.01813-23.
Vancouver
1.
Gerstmans H, Duyvejonck L, Vázquez R, Staes I, Borloo J, Abdelkader KAS, et al. Distinct mode of action of a highly stable, engineered phage lysin killing Gram-negative bacteria. MICROBIOLOGY SPECTRUM. 2023;11(6).
IEEE
[1]
H. Gerstmans et al., “Distinct mode of action of a highly stable, engineered phage lysin killing Gram-negative bacteria,” MICROBIOLOGY SPECTRUM, vol. 11, no. 6, 2023.
@article{01HGG5PNSQEG4Z0ENQ3GH637W2,
  abstract     = {{Therapeutic options to treat bacterial infections caused by Gram-negative pathogens are limited due to the spread of multidrug resistance. Protein engineering of phage-derived lysins can play a key role in the search for new antimicrobial compounds targeting Gram-negative pathogens. A previous high-throughput screen of a combinatorial lysin library identified lysin 1D10 active against Acinetobacter baumannii under elevated human serum concentrations. The engineered lysin consists of four modules: cecropin A, a linker, cell wall-binding domain, and an enzymatic active domain. Using time-lapse microscopy, we show that 1D10 has a distinct antibacterial mode of action resulting in local cell wall bulging at the septum instead of cell-wide lysis, as observed for previously reported engineered lysins that target Gram-negative bacteria. Our results indicate that the activity of 1D10 relies on the antibacterial activity of both cecropin A (CecA) and the enzymatically active domain. Based on a truncation analysis, the role of each of the four modules of 1D10 was dissected. We further compared the antibacterial spectrum, thermostability, and cytotoxicity of cecropin A alone and lysin 1D10. Both lysin 1D10 and CecA are most active against A. baumannii and are not cytotoxic toward human keratinocytes. Lysin 1D10 unfolds at 57 degrees C and has a remarkable refolding capacity, as it regains its activity even after exposure to 90 degrees C and sterilization conditions, whereas CecA is inactivated at 70 degrees C. Overall, the present study shows that an improved understanding of the killing mechanism and the protein properties will further support lysin engineering designs in the future. IMPORTANCE Engineered lysins are considered as highly promising alternatives for antibiotics. Our previous screening study using VersaTile technology identified 1D10 as a possible lead compound with activity against Acinetobacter baumannii strains under elevated human serum concentrations. In this manuscript, we reveal an unexpected mode of action and exceptional thermoresistance for lysin 1D10. Our findings shed new light on the development of engineered lysins, providing valuable insights for future research in this field.
}},
  articleno    = {{e01813-23}},
  author       = {{Gerstmans, Hans and Duyvejonck, Lisa and Vázquez, Roberto and Staes, Ines and Borloo, Jimmy and Abdelkader, Karim Abdelkader Soufi and Leroy, Jeroen and Cremelie, Emma and Gutierrez Fernandez, Diana and Tamés-Caunedo, Héctor and Ruas-Madiedo, Patricia and Rodríguez, Ana and Aertsen, Abram and Lammertyn, Jeroen and Lavigne, Rob and Briers, Yves}},
  issn         = {{2165-0497}},
  journal      = {{MICROBIOLOGY SPECTRUM}},
  keywords     = {{lysin,mode of action,Acinetobacter baumannii,serum,osmotic lysis,thermoresistance,ANTIBACTERIAL,RESISTANT,CECROPIN,ART-175}},
  language     = {{eng}},
  number       = {{6}},
  pages        = {{22}},
  title        = {{Distinct mode of action of a highly stable, engineered phage lysin killing Gram-negative bacteria}},
  url          = {{http://doi.org/10.1128/spectrum.01813-23}},
  volume       = {{11}},
  year         = {{2023}},
}

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