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Oracle selection provides insight into how far off practice is from Utopia in plant breeding

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Abstract
Since the introduction of genomic selection in plant breeding, high genetic gains have been realized in different plant breeding programs. Various methods based on genomic estimated breeding values (GEBVs) for selecting parental lines that maximize the genetic gain as well as methods for improving the predictive performance of genomic selection have been proposed. Unfortunately, it remains difficult to measure to what extent these methods really maximize long-term genetic values. In this study, we propose oracle selection, a hypothetical frame of mind that uses the ground truth to optimally select parents or optimize the training population in order to maximize the genetic gain in each breeding cycle. Clearly, oracle selection cannot be applied in a true breeding program, but allows for the assessment of existing parental selection and training population update methods and the evaluation of how far these methods are from the optimal utopian solution.
Keywords
genetic gain, genetic selection, genetic variation, genetic value, oracle, scoping, plant breeding, simulation study, GENOMIC SELECTION, RELIABILITY, PREDICTION

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MLA
Vanavermaete, David, et al. “Oracle Selection Provides Insight into How Far off Practice Is from Utopia in Plant Breeding.” FRONTIERS IN PLANT SCIENCE, vol. 14, 2023, doi:10.3389/fpls.2023.1218665.
APA
Vanavermaete, D., Maenhout, S., Fostier, J., & De Baets, B. (2023). Oracle selection provides insight into how far off practice is from Utopia in plant breeding. FRONTIERS IN PLANT SCIENCE, 14. https://doi.org/10.3389/fpls.2023.1218665
Chicago author-date
Vanavermaete, David, Steven Maenhout, Jan Fostier, and Bernard De Baets. 2023. “Oracle Selection Provides Insight into How Far off Practice Is from Utopia in Plant Breeding.” FRONTIERS IN PLANT SCIENCE 14. https://doi.org/10.3389/fpls.2023.1218665.
Chicago author-date (all authors)
Vanavermaete, David, Steven Maenhout, Jan Fostier, and Bernard De Baets. 2023. “Oracle Selection Provides Insight into How Far off Practice Is from Utopia in Plant Breeding.” FRONTIERS IN PLANT SCIENCE 14. doi:10.3389/fpls.2023.1218665.
Vancouver
1.
Vanavermaete D, Maenhout S, Fostier J, De Baets B. Oracle selection provides insight into how far off practice is from Utopia in plant breeding. FRONTIERS IN PLANT SCIENCE. 2023;14.
IEEE
[1]
D. Vanavermaete, S. Maenhout, J. Fostier, and B. De Baets, “Oracle selection provides insight into how far off practice is from Utopia in plant breeding,” FRONTIERS IN PLANT SCIENCE, vol. 14, 2023.
@article{01H8BJQ7BRT0XR8WSEWE83K1K9,
  abstract     = {{Since the introduction of genomic selection in plant breeding, high genetic gains have been realized in different plant breeding programs. Various methods based on genomic estimated breeding values (GEBVs) for selecting parental lines that maximize the genetic gain as well as methods for improving the predictive performance of genomic selection have been proposed. Unfortunately, it remains difficult to measure to what extent these methods really maximize long-term genetic values. In this study, we propose oracle selection, a hypothetical frame of mind that uses the ground truth to optimally select parents or optimize the training population in order to maximize the genetic gain in each breeding cycle. Clearly, oracle selection cannot be applied in a true breeding program, but allows for the assessment of existing parental selection and training population update methods and the evaluation of how far these methods are from the optimal utopian solution.}},
  articleno    = {{1218665}},
  author       = {{Vanavermaete, David and Maenhout, Steven and Fostier, Jan and De Baets, Bernard}},
  issn         = {{1664-462X}},
  journal      = {{FRONTIERS IN PLANT SCIENCE}},
  keywords     = {{genetic gain,genetic selection,genetic variation,genetic value,oracle,scoping,plant breeding,simulation study,GENOMIC SELECTION,RELIABILITY,PREDICTION}},
  language     = {{eng}},
  pages        = {{12}},
  title        = {{Oracle selection provides insight into how far off practice is from Utopia in plant breeding}},
  url          = {{http://doi.org/10.3389/fpls.2023.1218665}},
  volume       = {{14}},
  year         = {{2023}},
}

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