@article{01H6RD0M1JDP4GXC632PXBS2WZ,
  abstract     = {{MicroTom tomato has a short growth cycle and high transformation efficiency, and is a prospective model plant for studying organ development, metabolism, and plant-microbe interactions. Here, with a newly assembled reference genome for this tomato cultivar and abundant RNA-seq data derived from tissues of different organs/developmental stages/treatments, we constructed multiple gene co-expression networks, which will provide valuable clues for the identification of important genes involved in diverse regulatory pathways during plant growth, e.g., arbuscular mycorrhizal symbiosis and fruit development. Additionally, non-coding RNAs, including miRNAs, lncRNAs and circRNAs were also identified, together with their potential targets. Interacting networks between different types of non-coding RNAs (miRNA-lncRNA), and non-coding RNAs and genes (miRNA-mRNA and lncRNA-mRNA) were constructed as well. Our results and data will provide valuable information for the study of organ differentiation and development of this important fruit. Lastly, we established a database (http://eplant.njau.edu.cn/microTomBase/) with genomic and transcriptomic data, as well as details of gene co-expression and interacting networks on microTom, and this database should be of great value to those who wants to adopt microTom as a model plant for research.}},
  articleno    = {{uhad147}},
  author       = {{Xue, Jia-Yu and Fan, Hai-Yun and Zeng, Zhen and Zhou, Yu-Han and Hu, Shuai-Ya and Li, Sai-Xi and Cheng, Ying-Juan and Meng, Xiang-Ru and Chen, Fei and Shao, Zhu-Qing and Van de Peer, Yves}},
  issn         = {{2662-6810}},
  journal      = {{HORTICULTURE RESEARCH}},
  keywords     = {{microTom genome and RNAome,co-expression,non-coding RNA,interaction,database}},
  language     = {{eng}},
  number       = {{9}},
  pages        = {{11}},
  title        = {{Comprehensive regulatory networks for tomato organ development based on the genome and RNAome of microTom tomato}},
  url          = {{http://doi.org/10.1093/hr/uhad147}},
  volume       = {{10}},
  year         = {{2023}},
}

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