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Combining multiplex gene editing and doubled haploid technology in maize

Lennert Impens (UGent) , Christian Lorenzo (UGent) , Wout Vandeputte (UGent) , Pieter Wytynck (UGent) , Kevin Debray (UGent) , Jari Haeghebaert (UGent) , Denia Herwegh (UGent) , Thomas B. Jacobs (UGent) , Tom Ruttink (UGent) , Hilde Nelissen (UGent) , et al.
(2023) NEW PHYTOLOGIST. 239(4). p.1521-1532
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Abstract
A major advantage of using CRISPR/Cas9 for gene editing is multiplexing, that is, the simultaneous targeting of many genes. However, primary transformants typically contain hetero-allelic mutations or are genetic mosaic, while genetically stable lines that are homozygous are desired for functional analysis. Currently, a dedicated and labor-intensive effort is required to obtain such higher-order mutants through several generations of genetic crosses and genotyping. We describe the design and validation of a rapid and efficient strategy to produce lines of genetically identical plants carrying various combinations of homozygous edits, suitable for replicated analysis of phenotypical differences. This approach was achieved by combining highly multiplex gene editing in Zea mays (maize) with in vivo haploid induction and efficient in vitro generation of doubled haploid plants using embryo rescue doubling. By combining three CRISPR/Cas9 constructs that target in total 36 genes potentially involved in leaf growth, we generated an array of homozygous lines with various combinations of edits within three generations. Several genotypes show a reproducible 10% increase in leaf size, including a septuple mutant combination. We anticipate that our strategy will facilitate the study of gene families via multiplex CRISPR mutagenesis and the identification of allele combinations to improve quantitative crop traits.
Keywords
CRISPR/Cas9, doubled haploids, gene editing, gene family, haploid induction, maize, multiplex gene editing, mutation stacking, CRISPR, Cas9, INDUCTION, PHOSPHOLIPASE, LINES, STRATEGIES, GROWTH, PLANT

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Citation

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MLA
Impens, Lennert, et al. “Combining Multiplex Gene Editing and Doubled Haploid Technology in Maize.” NEW PHYTOLOGIST, vol. 239, no. 4, 2023, pp. 1521–32, doi:10.1111/nph.19021.
APA
Impens, L., Lorenzo, C., Vandeputte, W., Wytynck, P., Debray, K., Haeghebaert, J., … Pauwels, L. (2023). Combining multiplex gene editing and doubled haploid technology in maize. NEW PHYTOLOGIST, 239(4), 1521–1532. https://doi.org/10.1111/nph.19021
Chicago author-date
Impens, Lennert, Christian Lorenzo, Wout Vandeputte, Pieter Wytynck, Kevin Debray, Jari Haeghebaert, Denia Herwegh, et al. 2023. “Combining Multiplex Gene Editing and Doubled Haploid Technology in Maize.” NEW PHYTOLOGIST 239 (4): 1521–32. https://doi.org/10.1111/nph.19021.
Chicago author-date (all authors)
Impens, Lennert, Christian Lorenzo, Wout Vandeputte, Pieter Wytynck, Kevin Debray, Jari Haeghebaert, Denia Herwegh, Thomas B. Jacobs, Tom Ruttink, Hilde Nelissen, Dirk Inzé, and Laurens Pauwels. 2023. “Combining Multiplex Gene Editing and Doubled Haploid Technology in Maize.” NEW PHYTOLOGIST 239 (4): 1521–1532. doi:10.1111/nph.19021.
Vancouver
1.
Impens L, Lorenzo C, Vandeputte W, Wytynck P, Debray K, Haeghebaert J, et al. Combining multiplex gene editing and doubled haploid technology in maize. NEW PHYTOLOGIST. 2023;239(4):1521–32.
IEEE
[1]
L. Impens et al., “Combining multiplex gene editing and doubled haploid technology in maize,” NEW PHYTOLOGIST, vol. 239, no. 4, pp. 1521–1532, 2023.
@article{01H5HJZ6CHC7AY6Y41R1KPCQ9J,
  abstract     = {{A major advantage of using CRISPR/Cas9 for gene editing is multiplexing, that is, the simultaneous targeting of many genes. However, primary transformants typically contain hetero-allelic mutations or are genetic mosaic, while genetically stable lines that are homozygous are desired for functional analysis. Currently, a dedicated and labor-intensive effort is required to obtain such higher-order mutants through several generations of genetic crosses and genotyping. We describe the design and validation of a rapid and efficient strategy to produce lines of genetically identical plants carrying various combinations of homozygous edits, suitable for replicated analysis of phenotypical differences. This approach was achieved by combining highly multiplex gene editing in Zea mays (maize) with in vivo haploid induction and efficient in vitro generation of doubled haploid plants using embryo rescue doubling. By combining three CRISPR/Cas9 constructs that target in total 36 genes potentially involved in leaf growth, we generated an array of homozygous lines with various combinations of edits within three generations. Several genotypes show a reproducible 10% increase in leaf size, including a septuple mutant combination. We anticipate that our strategy will facilitate the study of gene families via multiplex CRISPR mutagenesis and the identification of allele combinations to improve quantitative crop traits.}},
  author       = {{Impens, Lennert and Lorenzo, Christian and Vandeputte, Wout and Wytynck, Pieter and Debray, Kevin and Haeghebaert, Jari and Herwegh, Denia and Jacobs, Thomas B. and Ruttink, Tom and Nelissen, Hilde and Inzé, Dirk and Pauwels, Laurens}},
  issn         = {{0028-646X}},
  journal      = {{NEW PHYTOLOGIST}},
  keywords     = {{CRISPR/Cas9,doubled haploids,gene editing,gene family,haploid induction,maize,multiplex gene editing,mutation stacking,CRISPR,Cas9,INDUCTION,PHOSPHOLIPASE,LINES,STRATEGIES,GROWTH,PLANT}},
  language     = {{eng}},
  number       = {{4}},
  pages        = {{1521--1532}},
  title        = {{Combining multiplex gene editing and doubled haploid technology in maize}},
  url          = {{http://doi.org/10.1111/nph.19021}},
  volume       = {{239}},
  year         = {{2023}},
}

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