Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses
- Author
- Aniko Meijer, Mohammad Atighi Quchan Atigh, Kristof Demeestere (UGent) , Tim De Meyer (UGent) , Klaas Vandepoele (UGent) and Tina Kyndt (UGent)
- Organization
- Project
-
- The role of non-coding RNAs in nematode-induced transgenerational priming in rice
- Epigenetic control of rice immunity hub genes
- Snelle vloeistofchromatografie hoge resolutie tandem massaspectrometrie ( LC - MS / MS ) voor hoge - doorvoer analyse van biologisch actieve organische uiterst lage verbindingen in natuurlijke en agro- ecosystemen .
- Abstract
- In a continuously changing and challenging environment, passing down the memory of encountered stress factors to offspring could provide an evolutionary advantage. In this study, we demonstrate the existence of 'intergenerational acquired resistance' in the progeny of rice (Oryza sativa) plants attacked by the belowground parasitic nematode Meloidogyne graminicola. Transcriptome analyses revealed that genes involved in defense pathways are generally downregulated in progeny of nematode-infected plants under uninfected conditions but show a stronger induction upon nematode infection. This phenomenon was termed "spring loading" and depends on initial downregulation by the 24nt siRNA biogenesis gene dicer-like 3a (dcl3a) involved in the RNA-directed DNA methylation pathway. Knock-down of dcl3a led to increased nematode susceptibility and abolished intergenerational acquired resistance, as well as jasmonic acid/ethylene spring loading in the offspring of infected plants. The importance of ethylene signaling in intergenerational resistance was confirmed by experiments on a knock-down line of ethylene insensitive 2 (ein2b), which lacks intergenerational acquired resistance. Taken together, these data indicate a role for DCL3a in regulating plant defense pathways during both within-generation and intergenerational resistance against nematodes in rice.
- Keywords
- Plant Science, Genetics, Physiology
Downloads
-
S1 DEGs.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 660.02 KB
-
S2 Read stats RNA-seq.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 30.51 KB
-
(...).xlsx
- supplementary material
- |
- UGent only
- |
- ZIP archive
- |
- 22.63 KB
-
S4 hormone genes IAR vs naive.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 20.77 KB
-
S5 primed nipp.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 52.53 KB
-
S6 read stats Secco2015.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 19.01 KB
-
S7 DMRs dcl3a vs nipp.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 1.42 MB
-
S8 read stats sRNA-seq.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 18.22 KB
-
S9 GO dcl3a vs Nipp.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 14.28 KB
-
S10 GO Mg vs C.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 26.23 KB
-
S11 primed dcl3a.xlsx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 26.15 KB
-
Supplementary-MRA.docx
- supplementary material
- |
- open access
- |
- ZIP archive
- |
- 380.31 KB
-
AAM.pdf
- full text (Accepted manuscript)
- |
- open access
- |
- |
- 5.01 MB
-
(...).pdf
- full text (Published version)
- |
- UGent only
- |
- |
- 2.51 MB
Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01GXZGFS53YK0T9VAJJRT1DD1G
- MLA
- Meijer, Aniko, et al. “Dicer-like 3a Mediates Intergenerational Resistance against Root-Knot Nematodes in Rice via Hormone Responses.” PLANT PHYSIOLOGY, vol. 193, no. 3, 2023, pp. 2071–85, doi:10.1093/plphys/kiad215.
- APA
- Meijer, A., Atighi Quchan Atigh, M., Demeestere, K., De Meyer, T., Vandepoele, K., & Kyndt, T. (2023). Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses. PLANT PHYSIOLOGY, 193(3), 2071–2085. https://doi.org/10.1093/plphys/kiad215
- Chicago author-date
- Meijer, Aniko, Mohammad Atighi Quchan Atigh, Kristof Demeestere, Tim De Meyer, Klaas Vandepoele, and Tina Kyndt. 2023. “Dicer-like 3a Mediates Intergenerational Resistance against Root-Knot Nematodes in Rice via Hormone Responses.” PLANT PHYSIOLOGY 193 (3): 2071–85. https://doi.org/10.1093/plphys/kiad215.
- Chicago author-date (all authors)
- Meijer, Aniko, Mohammad Atighi Quchan Atigh, Kristof Demeestere, Tim De Meyer, Klaas Vandepoele, and Tina Kyndt. 2023. “Dicer-like 3a Mediates Intergenerational Resistance against Root-Knot Nematodes in Rice via Hormone Responses.” PLANT PHYSIOLOGY 193 (3): 2071–2085. doi:10.1093/plphys/kiad215.
- Vancouver
- 1.Meijer A, Atighi Quchan Atigh M, Demeestere K, De Meyer T, Vandepoele K, Kyndt T. Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses. PLANT PHYSIOLOGY. 2023;193(3):2071–85.
- IEEE
- [1]A. Meijer, M. Atighi Quchan Atigh, K. Demeestere, T. De Meyer, K. Vandepoele, and T. Kyndt, “Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses,” PLANT PHYSIOLOGY, vol. 193, no. 3, pp. 2071–2085, 2023.
@article{01GXZGFS53YK0T9VAJJRT1DD1G,
abstract = {{In a continuously changing and challenging environment, passing down the memory of encountered stress factors to offspring could provide an evolutionary advantage. In this study, we demonstrate the existence of 'intergenerational acquired resistance' in the progeny of rice (Oryza sativa) plants attacked by the belowground parasitic nematode Meloidogyne graminicola. Transcriptome analyses revealed that genes involved in defense pathways are generally downregulated in progeny of nematode-infected plants under uninfected conditions but show a stronger induction upon nematode infection. This phenomenon was termed "spring loading" and depends on initial downregulation by the 24nt siRNA biogenesis gene dicer-like 3a (dcl3a) involved in the RNA-directed DNA methylation pathway. Knock-down of dcl3a led to increased nematode susceptibility and abolished intergenerational acquired resistance, as well as jasmonic acid/ethylene spring loading in the offspring of infected plants. The importance of ethylene signaling in intergenerational resistance was confirmed by experiments on a knock-down line of ethylene insensitive 2 (ein2b), which lacks intergenerational acquired resistance. Taken together, these data indicate a role for DCL3a in regulating plant defense pathways during both within-generation and intergenerational resistance against nematodes in rice.}},
author = {{Meijer, Aniko and Atighi Quchan Atigh, Mohammad and Demeestere, Kristof and De Meyer, Tim and Vandepoele, Klaas and Kyndt, Tina}},
issn = {{0032-0889}},
journal = {{PLANT PHYSIOLOGY}},
keywords = {{Plant Science,Genetics,Physiology}},
language = {{eng}},
number = {{3}},
pages = {{2071--2085}},
title = {{Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses}},
url = {{http://doi.org/10.1093/plphys/kiad215}},
volume = {{193}},
year = {{2023}},
}
- Altmetric
- View in Altmetric
- Web of Science
- Times cited: