
Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum
- Author
- Aiping Song, Jiangshuo Su, Haibin Wang, Zhongren Zhang, Xingtan Zhang, Yves Van de Peer (UGent) , Fei Chen, Weimin Fang, Zhiyong Guan, Fei Zhang, Zhenxing Wang, Likai Wang, Baoqing Ding, Shuang Zhao, Lian Ding, Ye Liu, Lijie Zhou, Jun He, Diwen Jia, Jiali Zhang, Chuwen Chen, Zhongyu Yu, Daojin Sun, Jiafu Jiang, Sumei Chen and Fadi Chen
- Organization
- Project
- Abstract
- Chrysanthemum (Chrysanthemum morifolium Ramat.) is a globally important ornamental plant with great economic, cultural, and symbolic value. However, research on chrysanthemum is challenging due to its complex genetic background. Here, we report a near-complete assembly and annotation for C. morifolium comprising 27 pseudochromosomes (8.15 Gb; scaffold N50 of 303.69 Mb). Comparative and evolutionary analyses reveal a whole-genome triplication (WGT) event shared by Chrysanthemum species approximately 6 million years ago (Mya) and the possible lineage-specific polyploidization of C. morifolium approximately 3 Mya. Multilevel evidence suggests that C. morifolium is likely a segmental allopolyploid. Furthermore, a combination of genomics and transcriptomics approaches demonstrate the C. morifolium genome can be used to identify genes underlying key ornamental traits. Phylogenetic analysis of CmCCD4a traces the flower colour breeding history of cultivated chrysanthemum. Genomic resources generated from this study could help to accelerate chrysanthemum genetic improvement.
- Keywords
- General Physics and Astronomy, General Biochemistry, Genetics and Molecular Biology, General Chemistry, Multidisciplinary, PHYLOGENETIC ANALYSIS, ANNOTATION, SEQUENCE, GENES, GENERATION, PREDICTION, MEIOSIS, TOOL, DIVERSIFICATION, IDENTIFICATION
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Song et al. (2023) Nature Communications14, 2021.pdf
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-01GXZ8T6X7DYTXHCF0PKT9P8BC
- MLA
- Song, Aiping, et al. “Analyses of a Chromosome-Scale Genome Assembly Reveal the Origin and Evolution of Cultivated Chrysanthemum.” NATURE COMMUNICATIONS, vol. 14, no. 1, 2023, doi:10.1038/s41467-023-37730-3.
- APA
- Song, A., Su, J., Wang, H., Zhang, Z., Zhang, X., Van de Peer, Y., … Chen, F. (2023). Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum. NATURE COMMUNICATIONS, 14(1). https://doi.org/10.1038/s41467-023-37730-3
- Chicago author-date
- Song, Aiping, Jiangshuo Su, Haibin Wang, Zhongren Zhang, Xingtan Zhang, Yves Van de Peer, Fei Chen, et al. 2023. “Analyses of a Chromosome-Scale Genome Assembly Reveal the Origin and Evolution of Cultivated Chrysanthemum.” NATURE COMMUNICATIONS 14 (1). https://doi.org/10.1038/s41467-023-37730-3.
- Chicago author-date (all authors)
- Song, Aiping, Jiangshuo Su, Haibin Wang, Zhongren Zhang, Xingtan Zhang, Yves Van de Peer, Fei Chen, Weimin Fang, Zhiyong Guan, Fei Zhang, Zhenxing Wang, Likai Wang, Baoqing Ding, Shuang Zhao, Lian Ding, Ye Liu, Lijie Zhou, Jun He, Diwen Jia, Jiali Zhang, Chuwen Chen, Zhongyu Yu, Daojin Sun, Jiafu Jiang, Sumei Chen, and Fadi Chen. 2023. “Analyses of a Chromosome-Scale Genome Assembly Reveal the Origin and Evolution of Cultivated Chrysanthemum.” NATURE COMMUNICATIONS 14 (1). doi:10.1038/s41467-023-37730-3.
- Vancouver
- 1.Song A, Su J, Wang H, Zhang Z, Zhang X, Van de Peer Y, et al. Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum. NATURE COMMUNICATIONS. 2023;14(1).
- IEEE
- [1]A. Song et al., “Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum,” NATURE COMMUNICATIONS, vol. 14, no. 1, 2023.
@article{01GXZ8T6X7DYTXHCF0PKT9P8BC, abstract = {{Chrysanthemum (Chrysanthemum morifolium Ramat.) is a globally important ornamental plant with great economic, cultural, and symbolic value. However, research on chrysanthemum is challenging due to its complex genetic background. Here, we report a near-complete assembly and annotation for C. morifolium comprising 27 pseudochromosomes (8.15 Gb; scaffold N50 of 303.69 Mb). Comparative and evolutionary analyses reveal a whole-genome triplication (WGT) event shared by Chrysanthemum species approximately 6 million years ago (Mya) and the possible lineage-specific polyploidization of C. morifolium approximately 3 Mya. Multilevel evidence suggests that C. morifolium is likely a segmental allopolyploid. Furthermore, a combination of genomics and transcriptomics approaches demonstrate the C. morifolium genome can be used to identify genes underlying key ornamental traits. Phylogenetic analysis of CmCCD4a traces the flower colour breeding history of cultivated chrysanthemum. Genomic resources generated from this study could help to accelerate chrysanthemum genetic improvement.}}, articleno = {{2021}}, author = {{Song, Aiping and Su, Jiangshuo and Wang, Haibin and Zhang, Zhongren and Zhang, Xingtan and Van de Peer, Yves and Chen, Fei and Fang, Weimin and Guan, Zhiyong and Zhang, Fei and Wang, Zhenxing and Wang, Likai and Ding, Baoqing and Zhao, Shuang and Ding, Lian and Liu, Ye and Zhou, Lijie and He, Jun and Jia, Diwen and Zhang, Jiali and Chen, Chuwen and Yu, Zhongyu and Sun, Daojin and Jiang, Jiafu and Chen, Sumei and Chen, Fadi}}, issn = {{2041-1723}}, journal = {{NATURE COMMUNICATIONS}}, keywords = {{General Physics and Astronomy,General Biochemistry, Genetics and Molecular Biology,General Chemistry,Multidisciplinary,PHYLOGENETIC ANALYSIS,ANNOTATION,SEQUENCE,GENES,GENERATION,PREDICTION,MEIOSIS,TOOL,DIVERSIFICATION,IDENTIFICATION}}, language = {{eng}}, number = {{1}}, pages = {{15}}, title = {{Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum}}, url = {{http://doi.org/10.1038/s41467-023-37730-3}}, volume = {{14}}, year = {{2023}}, }
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