Academic Bibliography

Search 200 years of publications by Ghent University researchers.

Hengchi Chen

ORCID iD: 0000-0003-1173-6622

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- Journal Article
- A1
- open access
Resolving the stasis-dynamism paradox : genome evolution in tree ferns

Zuoying Wei (UGent) , Hengchi Chen (UGent) , Chao Feng, Zengqiang Xia, Yves Van de Peer (UGent) , Ming Kang and Jing Wang

(2025) MOLECULAR BIOLOGY AND EVOLUTION. 42(10).
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- Journal Article
- A1
- open access
Bryophytes hold a larger gene family space than vascular plants

Shanshan Dong, Sibo Wang, Linzhou Li, Jin Yu, Yongxia Zhang, Jia-Yu Xue, Hengchi Chen (UGent) , Jianchao Ma, Yuying Zeng, Yuqing Cai, et al.

(2025) NATURE GENETICS. 57(10). p.2562-2569
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- Journal Article
- A1
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Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls

Zahin Ali, Qiao Wen Tan, Peng Ken Lim, Hengchi Chen (UGent) , Lukas Pfeifer, Irene Julca, Jia Min Lee, Birgit Classen, Sophie de Vries, Jan de Vries, et al.

(2025) NATURE PLANTS. 11(5). p.1028-1048
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SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

Ren-Gang Zhang, Hong-Yun Shang, Richard Ian Milne, Fabricio De Almeida Silva (UGent) , Hengchi Chen (UGent) , Min-Jie Zhou, Heng Shu, Kai-Hua Jia, Yves Van de Peer (UGent) and Yong-Peng Ma

(2025) NUCLEIC ACIDS RESEARCH. 53(7).
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- PhD Thesis
Inference and evolutionary significance of ancient polyploidy in plants

Hengchi Chen (UGent)

(2025)
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wgd v2 : a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

Hengchi Chen (UGent) , Arthur Zwaenepoel and Yves Van de Peer (UGent)

(2024) BIOINFORMATICS. 40(5).
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- Book Chapter
Inference of ancient polyploidy from genomic data

Hengchi Chen (UGent) and Arthur Zwaenepoel

(2023) Polyploidy : methods and protocols. In Methods in Molecular Biology 2545. p.3-18
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- Journal Article
- A1
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Revisiting ancient polyploidy in leptosporangiate ferns

Hengchi Chen (UGent) , Yuhan Fang, Arthur Zwaenepoel, Sanwen Huang, Yves Van de Peer (UGent) and Zhen Li (UGent)

(2023) NEW PHYTOLOGIST. 237(4). p.1405-1417
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The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences

Yuhan Fang, Xing Qin, Qinggang Liao, Ran Du, Xizhi Luo, Qian Zhou, Zhen Li (UGent) , Hengchi Chen (UGent) , Wanting Jin, Yaning Yuan, et al.

(2022) NATURE PLANTS. 8(9). p.1024-1037