Thomas Abeel

Journal Article
A1
open access

Pan-genome de Bruijn graph using the bidirectional FM-index

Lore Depuydt (UGent) , Luca Renders (UGent) , Thomas Abeel (UGent) and Jan Fostier (UGent)

(2023) BMC BIOINFORMATICS. 24(1).

A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification

Aurine Verkest, Thomas Abeel (UGent) , Ken Heyndrickx (UGent) , Jelle Van Leene (UGent) , Christa Lanz, Eveline Van De Slijke (UGent) , Nancy De Winne (UGent) , Dominique Eeckhout (UGent) , Geert Persiau (UGent) , Frank Van Breusegem (UGent) , et al.

(2014) PLANT PHYSIOLOGY. 164(3). p.1122-1133

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ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development

Liesbeth Vercruyssen (UGent) , Aurine Verkest, Nathalie Gonzalez Sanchez (UGent) , Ken Heyndrickx (UGent) , Dominique Eeckhout (UGent) , Soon-Ki Han, Teddy Jégu, Rafal Archacki, Jelle Van Leene (UGent) , Megan Andriankaja (UGent) , et al.

(2014) PLANT CELL. 26(1). p.210-229

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ORCAE: online resource for community annotation of eukaryotes

Lieven Sterck (UGent) , Kenny Billiau (UGent) , Thomas Abeel (UGent) , Pierre Rouzé (UGent) and Yves Van de Peer (UGent)

(2012) NATURE METHODS. 9(11). p.1041-1041

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Journal Article
A1
open access

Semantically linking molecular entities in literature through entity relationships

Sofie Van Landeghem (UGent) , Jari Björne, Thomas Abeel (UGent) , Bernard De Baets (UGent) , Tapio Salakoski and Yves Van de Peer (UGent)

(2012) BMC BIOINFORMATICS. 13.

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Journal Article
A1
open access

GenomeView : a next-generation genome browser

Thomas Abeel (UGent) , Thomas Van Parys (UGent) , Yvan Saeys (UGent) , James Galagan and Yves Van de Peer (UGent)

(2012) NUCLEIC ACIDS RESEARCH. 40(2).

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PhD Thesis
open access

In-silico prediction methods for genome annotation : promoter prediction, biomarker discovery and next-generation sequencing analysis

Thomas Abeel (UGent)

(2010)

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Miscellaneous
open access

Highlights of the BioTM 2010 workshop on advances in bio text mining

Thomas Abeel (UGent) , Sofie Van Landeghem (UGent) , Roser Morante, Vincent Van Asch, Yves Van de Peer (UGent) , Walter Daelemans and Yvan Saeys (UGent)

(2010) BMC BIOINFORMATICS. 11(suppl. 5).

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Journal Article
A1
open access

Discriminative and informative features for biomolecular text mining with ensemble feature selection

Sofie Van Landeghem (UGent) , Thomas Abeel (UGent) , Yvan Saeys (UGent) and Yves Van de Peer (UGent)

(2010) BIOINFORMATICS. 26(18). p.i554-i560

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Robust biomarker identification for cancer diagnosis with ensemble feature selection methods

Thomas Abeel (UGent) , Thibault Helleputte, Yves Van de Peer (UGent) , Pierre Dupont and Yvan Saeys (UGent)

(2010) BIOINFORMATICS. 26(3). p.392-398

Academic Bibliography

Thomas Abeel

Pan-genome de Bruijn graph using the bidirectional FM-index

A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification

ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development

ORCAE: online resource for community annotation of eukaryotes

Semantically linking molecular entities in literature through entity relationships

GenomeView : a next-generation genome browser

In-silico prediction methods for genome annotation : promoter prediction, biomarker discovery and next-generation sequencing analysis

Highlights of the BioTM 2010 workshop on advances in bio text mining

Discriminative and informative features for biomolecular text mining with ensemble feature selection

Robust biomarker identification for cancer diagnosis with ensemble feature selection methods

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