Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. ir. Jan Fostier

Faculty of Engineering and Architecture > Department of Information technology

ORCID iD: 0000-0002-9994-8269

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- Conference Paper
- open access
b-move: Faster bidirectional character extensions in a run-length compressed index

Lore Depuydt (UGent) , Luca Renders (UGent) , Simon Van de Vyver (UGent) , Lennart Veys, T. Gagie and Jan Fostier (UGent)

(2024) WABI2024, the 24th International Workshop on Algorithms in Bioinformatics. p.1-18
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- Conference Paper
- P1
- open access
Faster maximal exact matches with lazy LCP evaluation

Adrián Goga, Lore Depuydt (UGent) , Nathaniel K. Brown, Jan Fostier (UGent) , Travis Gagie and Gonzalo Navarro

(2024) 2024 Data Compression Conference (DCC). In IEEE Data Compression Conference p.123-132
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- Book Chapter
- open access
Automated Design of Efficient Search Schemes for Lossless Approximate Pattern Matching

Luca Renders (UGent) , Lore Depuydt (UGent) , Sven Rahmann and Jan Fostier (UGent)

(2024) Lecture Notes in Computer Science. In Research in Computational Molecular Biology p.164-184
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- Journal Article
- A1
- open access
Pan-genome de Bruijn graph using the bidirectional FM-index

Lore Depuydt (UGent) , Luca Renders (UGent) , Thomas Abeel (UGent) and Jan Fostier (UGent)

(2023) BMC BIOINFORMATICS. 24(1).
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- Conference Paper
- C1
- open access
Detecting translocation of DNA nanostructures through nanopores : first steps towards structural barcode readout

Pratima Upretee (UGent) , Sybren Santermans, Koen Martens, Juliette Gevers, Sanjin Marion, Wouter Van Den Bosch, Jan Fostier (UGent) and Nilesh Madhu (UGent)

(2023) 2023 31st European Signal Processing Conference (EUSIPCO). In European Signal Processing Conference p.1205-1209
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- Journal Article
- A1
- open access
Oracle selection provides insight into how far off practice is from Utopia in plant breeding

David Vanavermaete, Steven Maenhout (UGent) , Jan Fostier (UGent) and Bernard De Baets (UGent)

(2023) FRONTIERS IN PLANT SCIENCE. 14.
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- Journal Article
- A1
- open access
Improved node and arc multiplicity estimation in de Bruijn graphs using approximate inference in conditional random fields

Aranka Steyaert (UGent) , P. Audenaert (UGent) and Jan Fostier (UGent)

(2023) IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. 20(3). p.1995-2006
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- Conference Paper
- C3
- open access
Approximate pattern matching using search schemes and in-text verification

Luca Renders (UGent) , Lore Depuydt (UGent) and Jan Fostier (UGent)

(2022) Faculty of Engineering and Architecture Research Symposium 2022 (FEARS 2022), Abstracts.
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- Journal Article
- A1
- open access
BLSSpeller to discover novel regulatory motifs in maize

Razgar Seyed Rahmani, Dries Decap (UGent) , Jan Fostier (UGent) and Kathleen Marchal (UGent)

(2022) DNA RESEARCH. 29(4).
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Adaptive scoping : balancing short- and long-term genetic gain in plant breeding

David Vanavermaete, Jan Fostier (UGent) , Steven Maenhout (UGent) and Bernard De Baets (UGent)

(2022) EUPHYTICA. 218(8).

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