Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. Willem Waegeman

Faculty of Bioscience Engineering > Department of Data analysis and mathematical modelling

ORCID iD: 0000-0002-5950-3003

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- Journal Article
Harnessing machine learning to predict antibiotic susceptibility in Pseudomonas aeruginosa biofilms

Fauve Vergauwe (UGent) , Gaetan De Waele (UGent) , Andrea Sass (UGent) , Callum Highmore, Niall Hanrahan, Yoshiki Cook, Mads Lichtenberg, Margo Cnockaert (UGent) , Peter Vandamme (UGent) , Sumeet Mahajan, et al.

(2025) NPJ BIOFILMS AND MICROBIOMES. 11(1).
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- Miscellaneous
- open access
Valid prediction intervals for weather forecasting with conformal prediction

Thomas Mortier (UGent) , Cas Decancq (UGent) , Yusuf Sale, Alireza Javanmardi, Willem Waegeman (UGent) , Eyke Hüllermeier and Diego Miralles (UGent)

(2025)
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- Journal Article
- A1
- open access
A calibration test for evaluating set-based epistemic uncertainty representations

Mira Kristin Jürgens (UGent) , Thomas Mortier (UGent) , Eyke Hüllermeier, Viktor Bengs and Willem Waegeman (UGent)

(2025) MACHINE LEARNING. 114(9).
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- Journal Article
- A1
- open access
Evaluation of out-of-distribution detection methods for data shifts in single-cell transcriptomics

Lauren Theunissen (UGent) , Thomas Mortier (UGent) , Yvan Saeys (UGent) and Willem Waegeman (UGent)

(2025) BRIEFINGS IN BIOINFORMATICS. 26(3).
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- Journal Article
- A1
- open access
Conditional validity of heteroskedastic conformal regression

Nicolas Dewolf (UGent) , Bernard De Baets (UGent) and Willem Waegeman (UGent)

(2025) INFORMATION AND INFERENCE-A JOURNAL OF THE IMA. 14(2).
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- Journal Article
- A1
- open access
Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction

Gaetan De Waele (UGent) , Gerben Menschaert (UGent) , Peter Vandamme (UGent) and Willem Waegeman (UGent)

(2025) COMPUTERS IN BIOLOGY AND MEDICINE. 186.
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- Journal Article
- A1
- open access
Assessment of uncertainty quantification in universal differential equations

Nina Schmid (UGent) , David Fernandes del Pozo (UGent) , Willem Waegeman (UGent) and Jan Hasenauer

(2025) PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES. 383(2293). p.1-14
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- Journal Article
- A1
- open access
Machine learning reveals novel compound for the improved production of chitooligosaccharides in Escherichia coli

Friederike Mey, Gaetan De Waele (UGent) , Wouter Demeester (UGent) , Chiara Guidi (UGent) , Dries Duchi (UGent) , Tomek Diederen, Hanne Kochuyt, Kirsten Van Huffel, Nicola Zamboni, Willem Waegeman (UGent) , et al.

(2025) NEW BIOTECHNOLOGY. 86. p.39-46
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- Miscellaneous
- open access
Enhancing drug-target interaction prediction through transfer learning from activity cliff prediction tasks

Regina Ibragimova, Dimitrios Iliadis (UGent) and Willem Waegeman (UGent)

(2024)
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- Conference Paper
- C1
- open access
Is epistemic uncertainty faithfully represented by evidential deep learning methods?

Mira Kristin Jürgens (UGent) , Nis Meinert, Viktor Bengs, Eyke Hüllermeier and Willem Waegeman (UGent)

(2024) 41st International Conference on Machine Learning (ICML), Proceedings. p.22624-22642

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