Academic Bibliography

Search 200 years of publications by Ghent University researchers.

dr. Ruth Seurinck

Faculty of Sciences > Department of Mathematics, Computer Science and Statistics

ORCID iD: 0000-0002-6636-7572

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A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators

Yuji Ke (UGent) , Vincent Pujol (UGent) , Jasper Staut (UGent) , Lotte Pollaris (UGent) , Ruth Seurinck (UGent) , Thomas Eekhout (UGent) , Carolin Grones, Maite Saura Sanchez (UGent) , Michiel Van Bel (UGent) , Marnik Vuylsteke (UGent) , et al.

(2025) Cell Reports. 44(2).
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Pattern or artifact? Interactively exploring embedding quality with TRACE

Edith Heiter (UGent) , Liesbet Martens (UGent) , Ruth Seurinck (UGent) , Martin Guilliams (UGent) , Tijl De Bie (UGent) , Yvan Saeys (UGent) and Jefrey Lijffijt (UGent)

(2024) MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES-RESEARCH TRACK AND DEMO TRACK, PT VIII, ECML PKDD 2024. In Lecture Notes in Computer Science 14948. p.379-382
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Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics

Chananchida Sang-aram (UGent) , Robin Browaeys (UGent) , Ruth Seurinck (UGent) and Yvan Saeys (UGent)

(2024) ELIFE. 12.
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A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma

Joanna Pozniak, Dennis Pedri, Ewout Landeloos, Yannick Van Herck, Asier Antoranz, Lukas Vanwynsberghe, Ada Nowosad, Niccolo Roda, Samira Makhzami, Greet Bervoets, et al.

(2024) CELL. 187(1). p.166-183
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Improving the eligibility of task-based fMRI studies for meta-analysis : a review and reporting recommendations

Freya Acar (UGent) , Camille Maumet, Talia Heuten, Maya Vervoort, Han Bossier, Ruth Seurinck (UGent) and Beatrijs Moerkerke (UGent)

(2024) NEUROINFORMATICS. 22(1). p.5-22
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- Miscellaneous
- open access
MultiNicheNet : a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Robin Browaeys (UGent) , Jeroen Gilis (UGent) , Chananchida Sang-aram (UGent) , Pieter De Bleser (UGent) , Levi Hoste (UGent) , Simon Tavernier (UGent) , Diether Lambrechts, Ruth Seurinck (UGent) and Yvan Saeys (UGent)

(2023)
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A plasma miR-193b-365 signature combined with age and glycemic status predicts response to Lactococcus lactis-based antigen-specific immunotherapy in new-onset type 1 diabetes

Gabriele Sassi, Giada Licata, Giuliana Ventriglia, Amber Wouters, Pierre Lemaitre, Ruth Seurinck (UGent) , Alessia Mori, Giuseppina Emanuela Grieco, Samal Bissenova, Darcy Ellis, et al.

(2023) DIABETES. 72(10). p.1470-1482
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Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

Anthony Sonrel, Almut Luetge, Charlotte Soneson, Izaskun Mallona, Pierre-Luc Germain, Sergey Knyazev, Jeroen Gilis (UGent) , Reto Gerber, Ruth Seurinck (UGent) , Dominique Paul, et al.

(2023) GENOME BIOLOGY. 24(1).
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Ferroptosis and pyroptosis signatures in critical COVID-19 patients

Cédric Peleman, Samya Van Coillie, Symen Ligthart, Sze Men Choi (UGent) , Jan De Waele (UGent) , Pieter Depuydt (UGent) , Dominique Benoit (UGent) , HANNAH SCHAUBROECK (UGent) , Sven M. Francque, Karolien Dams, et al.

(2023) CELL DEATH AND DIFFERENTIATION. 30(9). p.2066-2077
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Single-cell profiling identifies a novel human polyclonal unconventional T cell lineage

Lore Billiet (UGent) , Laurenz De Cock (UGent) , Guillem Sanchez Sanchez, Rupert Mayer (UGent) , Glenn Goetgeluk (UGent) , Stijn De Munter (UGent) , Melissa Pille (UGent) , Joline Ingels (UGent) , Hanne Jansen, Karin Weening (UGent) , et al.

(2023) JOURNAL OF EXPERIMENTAL MEDICINE. 220(6).

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