Eric Bonnet

The Ectocarpus genome and brown algal genomics : the Ectocarpus Genome Consortium

J Mark Cock, Lieven Sterck (UGent) , Sophia Ahmed, Andrew E Allen, Grigoris Amoutzias (UGent) , Veronique Anthouard, François Artiguenave, Alok Arun, Jean-Marc Aury, Jonathan H Badger, et al.

(2012) Advances in Botanical Research. 64. p.141-184

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Conference Paper
C3
open access

Nature, nurture and the structure of macroalgal genomes

J Mark Cock, Jonas Collén, Lieven Sterck (UGent) , Pierre Rouzé (UGent) , Delphine Scornet, Veronique Anthouard, François Artiguenave, Jean-Marie Aury, Kenny Billiau (UGent) , Eric Bonnet (UGent) , et al.

(2011) EUROPEAN JOURNAL OF PHYCOLOGY. 46(suppl. 1). p.39-39

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The genome of Tetranychus urticae reveals herbivorous pest adaptations

Miodrag Grbić, Thomas Van Leeuwen (UGent) , Richard M Clark, Stephane Rombauts (UGent) , Pierre Rouzé (UGent) , Vojislava Grbić, Edward J Osborne, Wannes Dermauw (UGent) , Thi Ngoc Phuong Cao (UGent) , Félix Ortego, et al.

(2011) NATURE. 479(7374). p.487-492

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Towards system level modeling of functional modules and regulatory pathways using genome-scale data

Tom Michoel (UGent) , Anagha Madhusudan Joshi (UGent) , Eric Bonnet (UGent) , Vanessa Vermeirssen (UGent) and Yves Van de Peer (UGent)

(2010) Proceedings of the Seventh International Workshop on Computational Systems Biology (WCSB 2010). In TICSP series p.71-74

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Journal Article
A1
open access

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data

Eric Bonnet (UGent) , Tom Michoel (UGent) and Yves Van de Peer (UGent)

(2010) BIOINFORMATICS. 26(18). p.i638-i644

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TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

Eric Bonnet (UGent) , Ying He (UGent) , Kenny Billiau (UGent) and Yves Van de Peer (UGent)

(2010) BIOINFORMATICS. 26(12). p.1566-1568

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The Ectocarpus genome and the independent evolution of multicellularity in brown algae

J Mark Cock, Lieven Sterck (UGent) , Pierre Rouzé (UGent) , Delphine Scornet, Andrew E Allen, Grigoris Amoutzias (UGent) , Véronique Anthouard, François Artiguenave, Jean-Marc Aury, Jonathan H Badger, et al.

(2010) NATURE. 465(7298). p.617-621

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Journal Article
A1
open access

Module network inference from a cancer gene expression data set identifies microRNA regulated modules

Eric Bonnet (UGent) , Marianthi Tatari, Anagha Madhusudan Joshi (UGent) , Tom Michoel (UGent) , Kathleen Marchal (UGent) , Geert Berx (UGent) and Yves Van de Peer (UGent)

(2010) PLOS ONE. 5(4).

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Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development

Vanessa Vermeirssen (UGent) , Anagha Madhusudan Joshi (UGent) , Tom Michoel (UGent) , Eric Bonnet (UGent) , Tine Casneuf and Yves Van de Peer (UGent)

(2009) MOLECULAR BIOSYSTEMS. 5(12). p.1817-1830

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Generic eukaryotic core promoter prediction using structural features of DNA

Thomas Abeel (UGent) , Yvan Saeys (UGent) , Eric Bonnet (UGent) , Pierre Rouzé (UGent) and Yves Van de Peer (UGent)

(2008) GENOME RESEARCH. 18(2). p.310-323

Academic Bibliography

Eric Bonnet

The Ectocarpus genome and brown algal genomics : the Ectocarpus Genome Consortium

Nature, nurture and the structure of macroalgal genomes

The genome of Tetranychus urticae reveals herbivorous pest adaptations

Towards system level modeling of functional modules and regulatory pathways using genome-scale data

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

Module network inference from a cancer gene expression data set identifies microRNA regulated modules

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development

Generic eukaryotic core promoter prediction using structural features of DNA

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