Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. Yvan Saeys

Faculty of Sciences > Department of Mathematics, Computer Science and Statistics

ORCID iD: 0000-0002-0415-1506

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Automated computational flow cytometry correlates decreasing neutrophil-to-lymphocyte ratio to improved survival in NSCLC after immune checkpoint blockade

Katrien Quintelier (UGent) , Maaike M Hofman, Mandy van Brakel, Cor H Lamers, Ron H J Mathijssen, Daphne W Dumoulin, Cor van der Leest, Ruth Seurinck (UGent) , Christianne Groeneveldt, Sarah Bonte (UGent) , et al.

(2026) CANCER IMMUNOLOGY RESEARCH. 14(8). p.1351-1361
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The unfolded protein sensor IRE1 is essential for homeostatic dendritic cell maturation

Victor Bosteels, Sandra Maréchal (UGent) , Eva Cloots (UGent) , Farzaneh Fayazpour (UGent) , Clint De Nolf (UGent) , Laurien Van Heddegem, Simon Tavernier (UGent) , Sofie Rennen (UGent) , Seraja Amstelveen (UGent) , Liesbet Martens (UGent) , et al.

(2026) NATURE COMMUNICATIONS. 17(1).
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CytoScan : automated detection of technical anomalies for cytometry quality control

Tim R. Mocking, Felix Zwolle, Yejin Park, Angele Kelder, Yvan Saeys (UGent) , Jacqueline Cloos, Sofie Van Gassen (UGent) and Costa Bachas

(2026) CYTOMETRY PART A.
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CARGO : a cytometry analysis framework via regularized graph optimal-transport

Abida Sanjana Shemonti, Grzegorz B. Gmyrek, Katrien Quintelier (UGent) , Sofie Van Gassen (UGent) , Yvan Saeys (UGent) , Marcella Willemsen, Joachim G. J. V. Aerts, Eva V. E. Madsen, J. Paul Robinson, Alex Pothen, et al.

(2026) PLOS COMPUTATIONAL BIOLOGY. 22(6).
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anndataR improves interoperability between R and Python in single-cell transcriptomics

Louise Deconinck (UGent) , Luke Zappia, Robrecht Cannoodt (UGent) , Martin Morgan, Isaac Virshup, Chananchida Sang-aram (UGent) , Danila Bredikhin, Brian Schilder, Ruth Seurinck (UGent) , Yvan Saeys (UGent) , et al.

(2026) BIOINFORMATICS. 42(6).
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Scalable analysis of whole slide spatial proteomics with Harpy

Benjamin Rombaut (UGent) , Arne Defauw (UGent) , Frank Vernaillen (UGent) , Julien Mortier (UGent) , Evelien Van Hamme (UGent) , Sofie Van Gassen (UGent) , Ruth Seurinck (UGent) and Yvan Saeys (UGent)

(2026) BIOINFORMATICS. 42(3).
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IL-4 treatment induces apoptosis of blood monocytes and proliferation of recruited injury-associated macrophages to resolve liver injury

Ruairi W Lynch, Pieter Louwe (UGent) , Liesbet Martens (UGent) , Maria Elena Candela, Calum C Bain, Catherine Hawley, Neil C Henderson, Prakash Ramachandran, Cécile Bénézech, Charlotte Scott (UGent) , et al.

(2026) CELL REPORTS. 45(4).
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CompensAID : an automated detection tool for reference errors

Rosan Olsman, Sarah Bonte (UGent) , Mattias Hofmans (UGent) , Malicorne Buysse (UGent) , Katrien Van Der Borght (UGent) , Yvan Saeys (UGent) , Vincent H. J. van der Velden and Sofie Van Gassen

(2026) CYTOMETRY PART A. 109(2). p.124-134
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Cross-species cellular mapping and humanization of Fcγ receptors to advance antibody modeling

Karel Van Damme (UGent) , Dorine Sichien (UGent) , Katrien Van Der Borght (UGent) , Justine Van Moorleghem (UGent) , Sofie Van Gassen (UGent) , Joseph Jorssen, Seppe De Winter, Elisabeth De Leeuw (UGent) , Caihong Wang, Qingqing Chai, et al.

(2026) SCIENCE IMMUNOLOGY. 11(115).
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PIDgeon : an explainable AI model for improved flow cytometry-based screening of lymphoid primary immunodeficiencies

Annelies Emmaneel (UGent) , Jana Neirinck (UGent) , Alba Torres-Valle, Sofie Van Gassen (UGent) , Sarah Bonte (UGent) , Malicorne Buysse (UGent) , Jacques J. M. Van Dongen, Alberto Orfao, Mirjam Van Der Burg, Tomas Kalina, et al.

(2026) CLINICAL CHEMISTRY. 72(5). p.601-612

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