Academic Bibliography

Search 200 years of publications by Ghent University researchers.

prof. dr. Yvan Saeys

Faculty of Sciences > Department of Applied mathematics, computer science and statistics

ORCID iD: 0000-0002-0415-1506

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- Conference Paper
- open access
Pattern or Artifact? Interactively Exploring Embedding Quality with TRACE

Edith Heiter (UGent) , Liesbet Martens (UGent) , Ruth Seurinck (UGent) , Martin Guilliams (UGent) , Tijl De Bie (UGent) , Yvan Saeys (UGent) and Jefrey Lijffijt (UGent)

(2024) Lecture Notes in Computer Science. In Machine Learning and Knowledge Discovery in Databases. Research Track and Demo Track p.379-382
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- Journal Article
- A1
- open access
Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics

Chananchida Sang-aram (UGent) , Robin Browaeys (UGent) , Ruth Seurinck (UGent) and Yvan Saeys (UGent)

(2024) ELIFE. 12.
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- Journal Article
- A1
- open access
Evaluating feature attribution methods in the image domain

Arne Gevaert (UGent) , Axel-Jan Rousseau, Thijs Becker, Dirk Valkenborg, Tijl De Bie (UGent) and Yvan Saeys (UGent)

(2024) MACHINE LEARNING.
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- Journal Article
- A1
- open access
Efficient cytometry analysis with FlowSOM in Python boosts interoperability with other single-cell tools

Artuur Couckuyt (UGent) , Benjamin Rombaut (UGent) , Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2024) BIOINFORMATICS. 40(4).
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- Miscellaneous
- open access
Defining and benchmarking open problems in single-cell analysis

Malte Luecken, Scott Gigante, Daniel Burkhardt, Robrecht Cannoodt (UGent) , Daniel Strobl, Nikolay Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, et al.

(2024)
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- Journal Article
- A1
- open access
SpatialData : an open and universal data framework for spatial omics

Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B. Shrestha, et al.

(2024) NATURE METHODS.
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- Journal Article
- A1
- open access
Myelodysplastic neoplasms dissected into indolent, leukaemic and unfavourable subtypes by computational clustering of haematopoietic stem and progenitor cells

Margot F. van Spronsen, Sofie Van Gassen (UGent) , Carolien Duetz, Theresia M. Westers, Yvan Saeys (UGent) and Arjan A. van de Loosdrecht

(2024) LEUKEMIA. 38. p.pages1365-1377
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- Journal Article
- A1
- open access
Uncertainty-aware single-cell annotation with a hierarchical reject option

Lauren Theunissen (UGent) , Thomas Mortier (UGent) , Yvan Saeys (UGent) and Willem Waegeman (UGent)

(2024) BIOINFORMATICS. 40(3).
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- Journal Article
- A1
- open access
A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma

Joanna Pozniak, Dennis Pedri, Ewout Landeloos, Yannick Van Herck, Asier Antoranz, Lukas Vanwynsberghe, Ada Nowosad, Niccolo Roda, Samira Makhzami, Greet Bervoets, et al.

(2024) CELL. 187(1). p.166-183
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- Journal Article
- A1
- open access
An introduction to adversarially robust deep learning

Jonathan Peck (UGent) , Bart Goossens (UGent) and Yvan Saeys (UGent)

(2024) IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE. 46(4). p.2071-2090

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